View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_17 (Length: 394)
Name: NF5970_low_17
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 176 - 354
Target Start/End: Original strand, 35601743 - 35601923
Alignment:
| Q |
176 |
aagagagtatgttgacttagatctttgtcatcttctcatagaatctcaaatgtaacatagtgttaatccaaactctaaatctctttaggtgtacttatga |
275 |
Q |
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| T |
35601743 |
aagagagtatgttgacttagatctttgtcatcttctcatagaatctcaaatgtaacatagtgttaatccaaactctaaatctctttaggtgtacttatga |
35601842 |
T |
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| Q |
276 |
attttattaattacaa--nnnnnnnnnngaacaaccaattatattaaacaaacaacttcttgagaaaagggaattgctgca |
354 |
Q |
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| T |
35601843 |
attttattaattacaaattttttttttgtaacaaccaattatattaaacaaacaacttcttgagaaaagggaattgctgca |
35601923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 35601585 - 35601698
Alignment:
| Q |
16 |
tatatgcataaatgtaggttttatgcttcatgttttcatgtgtaaagtctacattataagtgtagaaagtggaagtgatatagatccaaagaagttaaac |
115 |
Q |
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| T |
35601585 |
tatatgcataaatgtaggttttatgcttcatgttttcatgtgtaaagtctacattataagtgtagaaagtggaagtgatatagatccaaagaaattaaac |
35601684 |
T |
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| Q |
116 |
attgaagataagat |
129 |
Q |
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| T |
35601685 |
attgaagacaagat |
35601698 |
T |
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