View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_18 (Length: 387)
Name: NF5970_low_18
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 379
Target Start/End: Complemental strand, 36471157 - 36470784
Alignment:
| Q |
6 |
actataatgcattgtcatcttgatttatgattttgataaccatatttcttgcagctttctgtgatatgtgacatttgcaggaagaatgtcagtctcaatg |
105 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36471157 |
actataatgcattgtcatcttgctttatgattttgataaccatatttcttgcagctttctgtgatatgtgacatttgcaggaagaatgtcagtctcaatg |
36471058 |
T |
|
| Q |
106 |
taaaaactcagttgagatctttcaaaatgttttcctttaaaattatctggctttaattcaatgcacatctagtctcttaacttaatgtattattcttcaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36471057 |
taaaaactcagttgagatctttcaaaatgttttcctttaaaattatctggctttaattcaatgcacatctagtctcttaacttaatgtattattcttcaa |
36470958 |
T |
|
| Q |
206 |
caaatgtcgaaggagttaatactagttttgttgtgttggattagtctgctaatttaatatcttcaagttagaggcacgttcaagaagttaaagcctacta |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||||||| |
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| T |
36470957 |
caaatgtcgaaggagttaatactagttttgttgtgttggattagtcttctaatttaaaatcttcaatttagaggcacgtgcaagaagttaaagcctacta |
36470858 |
T |
|
| Q |
306 |
attgttcccttgttgtaaagtgagagtcattggattgagtgaacgatgtgatgaaaatggttgaagtgatgatg |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36470857 |
attgttcccttgttgtaaagtgagagtcattggattgagtgaacgatgtgatgaaaatggttgaagtgatgatg |
36470784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 6 - 379
Target Start/End: Original strand, 29389679 - 29390053
Alignment:
| Q |
6 |
actataatgcattgtcatcttgatttatgattttgataaccatatttcttgcagctttc-tgtgatatgtgacatttgcaggaagaatgtcagtctcaat |
104 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29389679 |
actataatgcattgtcatcttgcattatgattttgataaccatatttcttgcagctttcatgtgatatgtgacatttgcaggaagaatgtcagtctcaat |
29389778 |
T |
|
| Q |
105 |
gtaaaaactcagttgagatctttcaaaatgttttcctttaaaattatctggctttaattcaatgcacatctagtctcttaacttaatgtattattcttca |
204 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
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| T |
29389779 |
gtaaatactcagttgagatctttcaaaatgttttcctttaaaatcatctggctttaattcaatgcacatctggtctcttagcttaatgtattattcttca |
29389878 |
T |
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| Q |
205 |
acaaatgtcgaaggagttaatactagttttgttgtgttggattagtctgctaatttaatatcttcaagttagaggcacgttcaagaagttaaagcctact |
304 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||| |||||||| |||||||||| | ||||||||||||||||||| |
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| T |
29389879 |
acaaatgtctaaggagttaatactagtttagttgtgttggatgagtcttctaatttaaaatcttcaatttagaggcacatgcaagaagttaaagcctact |
29389978 |
T |
|
| Q |
305 |
aattgttcccttgttgtaaagtgagagtcattggattgagtgaacgatgtgatgaaaatggttgaagtgatgatg |
379 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||| ||||||| || |||||||||| |||||||| |
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| T |
29389979 |
aattgttcccttgttgtaaagtgagagtcatcggattgagtgaatgatgtgacgagaatggttgaactgatgatg |
29390053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 6 - 378
Target Start/End: Original strand, 21187715 - 21188088
Alignment:
| Q |
6 |
actataatgcattgtcatcttgatttatgattttgataaccatatttcttgcagctttc-tgtgatatgtgacatttgcaggaagaatgtcagtctcaat |
104 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21187715 |
actataatgcattgtcatcttgcattatgattttgataaccatatttcttgcagctttcatgtgatatgtgacatttgcaggaagaatgtcagtctcaat |
21187814 |
T |
|
| Q |
105 |
gtaaaaactcagttgagatctttcaaaatgttttcctttaaaattatctggctttaattcaatgcacatctagtctcttaacttaatgtattattcttca |
204 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
21187815 |
gtaaatactcagttgagatctttcaaaatgttttcctttgaatttatctggctttaattcaatgcacatctagtctcttagcttaatgtattattcttca |
21187914 |
T |
|
| Q |
205 |
acaaatgtcgaaggagttaatactagttttgttgtgttggattagtctgctaatttaatatcttcaagttagaggcacgttcaagaagttaaagcctact |
304 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||||| |||||||| |||||||||| | || |||||||||||||||| |
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| T |
21187915 |
acaaatgtctaaggagttaatactagtttagttgtgttggatgagtcttctaatttaaaatcttcaatttagaggcacatgcaggaagttaaagcctact |
21188014 |
T |
|
| Q |
305 |
aattgttcccttgttgtaaagtgagagtcattggattgagtgaacgatgtgatgaaaatggttgaagtgatgat |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||| |
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| T |
21188015 |
tattgttcccttgttgtaaagtgagagtcattggattgagtgaatgatgtgatgagaatggttgaactgatgat |
21188088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 32133513 - 32133453
Alignment:
| Q |
10 |
taatgcattgtcatcttgatttatgattttgataaccatatttcttgcagctttctgtgat |
70 |
Q |
| |
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|||||||||||||||||| |||| |||||||||||||| || ||||||||||||||||| |
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|
| T |
32133513 |
taatgcattgtcatcttgcattatcattttgataaccatcttatttgcagctttctgtgat |
32133453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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