View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5970_low_2 (Length: 808)

Name: NF5970_low_2
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5970_low_2
NF5970_low_2
[»] chr3 (4 HSPs)
chr3 (255-798)||(33177884-33178428)
chr3 (17-187)||(33177649-33177818)
chr3 (16-180)||(44809912-44810073)
chr3 (168-210)||(44809856-44809898)
[»] chr8 (1 HSPs)
chr8 (52-181)||(20086109-20086238)
[»] chr5 (2 HSPs)
chr5 (29-134)||(17852393-17852498)
chr5 (167-228)||(7250081-7250142)
[»] chr2 (2 HSPs)
chr2 (152-210)||(30497763-30497821)
chr2 (279-351)||(9598419-9598491)
[»] chr7 (1 HSPs)
chr7 (167-210)||(45414325-45414368)
[»] chr4 (1 HSPs)
chr4 (167-228)||(17915184-17915245)
[»] chr1 (2 HSPs)
chr1 (167-228)||(13706137-13706198)
chr1 (170-227)||(15292752-15292809)


Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 255 - 798
Target Start/End: Original strand, 33177884 - 33178428
Alignment:
Q  255 caattttcttagttttatcatcattcatcgtcatgttgttacaattttgtgtaaatgtattcattcgtcctatagccatatataccaatctatttttggt 354  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33177884 caattttcttagttttatcatcattcatcgtcatgttgttacaattttgtgtaaatgtattcattcgtcctatagccatatataccaatctatttttggt 33177983  T
Q  355 tagtatataaaagaattcctccttttatcaaaaaagaaagaagactaattgatccactatacgagtccatgagaaggcgatcacactttgtgggggcaga 454  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  33177984 tagtatataaaagaattcctccttttatcaaaaaagaaagaagaataattgatccactatacgagtccatgagaaggcgatcacactttgtgggggcagg 33178083  T
Q  455 gttgcatgattaatttatttaggaacacaataatttcttgatgatggggctaaaactaatttataagggctaaataaaacattaagagcctgcatgtata 554  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33178084 gttgcatgattaatttatttaggaacacaataatttcttgatgatggggctaaaactaatttataagggctaaataaaacattaagagcctgcatgtata 33178183  T
Q  555 tgacaaaatccatgttgtagtccaaagtattttacaaaacgaggttatagtgacaaccgaatcttttgtttgaataataatataagtgattgtgcaaatt 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33178184 tgacaaaatccatgttgtagtccaaagtattttacaaaacgaggttatagtgacaaccgaatcttttgtttgaataataatataagtgattgtgcaaatt 33178283  T
Q  655 aaaagatctatttcagatttgtggatggaggaacataaaataagttaagg-nnnnnnnnnnacaaggaataagttatggttattctgcaccacttttact 753  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||| ||||||||||||| ||||| |||    
T  33178284 aaaagatctatttcagatttgtggatggaggaacataaaataagttaaggttttttattttacaaggaataagttaaggttattctgcacaactttcact 33178383  T
Q  754 ttaatccctttcttactctccacacttaccgtaccatgatgatgt 798  Q
    ||||||| |||||||||||||||||||||||||||||||||||||    
T  33178384 ttaatccgtttcttactctccacacttaccgtaccatgatgatgt 33178428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 33177649 - 33177818
Alignment:
Q  17 caatccaaaactctagatctatcctggttcatgagtagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagttt 116  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33177649 caatccaaaactctagatctatcctggttcatgagtagt-gatagtggaaaacacaaacataaaagttgggaatgaaatggtaaacaacaattacagttt 33177747  T
Q  117 ttgggtgttttaattttatttacagattgcataatgtgaagaaaggaattcagcggcagttaactgccggc 187  Q
    |||||||||||||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||||||||    
T  33177748 ttgggtgttttaattttatttacagagtgcgtaatatgaagaaaggaattcagcagcagttaactgccggc 33177818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 44810073 - 44809912
Alignment:
Q  16 tcaatccaaaactctagatctatcctggttcatgagtagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtt 115  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44810073 tcaatccaaaactctagatctatcctgattcatgagtagttgatagtggaaaacacaaacataagagttgggaatgaaatggtaaagaacaattacagtt 44809974  T
Q  116 tttgggtgttttaattttatttacagattgcataatgtgaagaaaggaattcagcggcagttaac 180  Q
    ||||||||||||||||||||||||||| ||    ||||||||||||||||||||||| |||||||    
T  44809973 tttgggtgttttaattttatttacagagtg---tatgtgaagaaaggaattcagcggtagttaac 44809912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 44809898 - 44809856
Alignment:
Q  168 agcggcagttaactgccggcggtttctccaacagtagttaact 210  Q
    ||||||||||||||||||||||||| |||||| ||||||||||    
T  44809898 agcggcagttaactgccggcggtttttccaacggtagttaact 44809856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 118; Significance: 9e-60; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 52 - 181
Target Start/End: Original strand, 20086109 - 20086238
Alignment:
Q  52 tagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttttgggtgttttaattttatttacagattgcataat 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  20086109 tagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttatgggtgttttaattttatttacagagtgcataat 20086208  T
Q  152 gtgaagaaaggaattcagcggcagttaact 181  Q
    ||||||||||||||||||||| ||||||||    
T  20086209 gtgaagaaaggaattcagcggtagttaact 20086238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 29 - 134
Target Start/End: Original strand, 17852393 - 17852498
Alignment:
Q  29 ctagatctatcctggttcatgagtagttgatagtggaaaacacaaacataaaagttgggaatgaaatggtaaagaacaattacagtttttgggtgtttta 128  Q
    ||||||||||| || ||||||||||||||| ||||||||||||||||||||||| || || ||||||||| ||||||||||||||||||||||| |||||    
T  17852393 ctagatctatcatgattcatgagtagttgagagtggaaaacacaaacataaaagctgcgagtgaaatggtgaagaacaattacagtttttgggtatttta 17852492  T
Q  129 atttta 134  Q
    ||||||    
T  17852493 atttta 17852498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 7250142 - 7250081
Alignment:
Q  167 cagcggcagttaactgccggcggtttctccaacagtagttaactcccgtcggaggcttttta 228  Q
    |||||||||||||| |||| |||||  ||||||||||||||||| |||  |||| |||||||    
T  7250142 cagcggcagttaaccgccgacggttcttccaacagtagttaactaccgctggagacttttta 7250081  T

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Target: chr2 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 30497763 - 30497821
Alignment:
Q  152 gtgaagaaaggaattcagcggcagttaactgccggcggtttctccaacagtagttaact 210  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  30497763 gtgaagaaaggaattcagcggcagttaactgccggcggtttccccaacggtagttaact 30497821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 279 - 351
Target Start/End: Complemental strand, 9598491 - 9598419
Alignment:
Q  279 tcatcgtcatgttgttacaattttgtgtaaatgtattcattcgtcctatagccatatataccaatctattttt 351  Q
    ||||| |||||||| ||||| |||||||||||||||||||||||||||||| |||| || |||||||||||||    
T  9598491 tcatcatcatgttgctacaaatttgtgtaaatgtattcattcgtcctatagtcatacatgccaatctattttt 9598419  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 45414368 - 45414325
Alignment:
Q  167 cagcggcagttaactgccggcggtttctccaacagtagttaact 210  Q
    ||||||||||||||||||| ||||||||||||| || |||||||    
T  45414368 cagcggcagttaactgccgccggtttctccaacggttgttaact 45414325  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 17915245 - 17915184
Alignment:
Q  167 cagcggcagttaactgccggcggtttctccaacagtagttaactcccgtcggaggcttttta 228  Q
    |||||||||||||||| ||||| ||| |||||| |||||||||| |||  || |||||||||    
T  17915245 cagcggcagttaactgtcggcgatttttccaacggtagttaactaccgctgggggcttttta 17915184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 13706198 - 13706137
Alignment:
Q  167 cagcggcagttaactgccggcggtttctccaacagtagttaactcccgtcggaggcttttta 228  Q
    |||| ||||||||||| |||||||||  ||||| |||||||||| |||| || |||||||||    
T  13706198 cagcagcagttaactgtcggcggttttcccaacggtagttaactaccgttgggggcttttta 13706137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 227
Target Start/End: Original strand, 15292752 - 15292809
Alignment:
Q  170 cggcagttaactgccggcggtttctccaacagtagttaactcccgtcggaggcttttt 227  Q
    |||||||||||||| ||||||||| ||||| ||||||||||  ||  |||||||||||    
T  15292752 cggcagttaactgctggcggtttccccaacggtagttaactatcgctggaggcttttt 15292809  T

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