View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_20 (Length: 368)
Name: NF5970_low_20
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 20 - 356
Target Start/End: Complemental strand, 3642538 - 3642202
Alignment:
| Q |
20 |
attcggtgctcttttaaatggtttccagattcatgaaaacgtctatgttgctagtcaggtgaaagtacgactaaccaagctgaaaccttttcaaaatgaa |
119 |
Q |
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| T |
3642538 |
attcggtgctcttttaaatggtttccagattcatgaaaacgtctatgttgctagtcaagtgaaagtacgactaaccaagctgaaaccttttcaaaatgaa |
3642439 |
T |
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| Q |
120 |
gcataaaaggattgcaaagacaattggtcatggttcagttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaa |
219 |
Q |
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| T |
3642438 |
gcataaaaggattgcaaagacaattggtcatggttcagttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaa |
3642339 |
T |
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| Q |
220 |
gtattgactgccagagaagtttcaacaaggaaaatcggaaccattgtctagtgtagcatttgttcatctaatttcagctgccttggttagtttattcgca |
319 |
Q |
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| T |
3642338 |
gtattgactgccggagaagtttcaacaaggaaaatcggaaccattgtctagtgtagcatttgttcatctaatttcagctgccttggttagtttattcgca |
3642239 |
T |
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| Q |
320 |
tcaatatcctggtcatgttaactttggcactgatgat |
356 |
Q |
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| T |
3642238 |
tcaatatcctggtcatgttaactttggcactgatgat |
3642202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 9806908 - 9806801
Alignment:
| Q |
115 |
atgaagcataaaaggattgcaaagacaattggtcatggttcagttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaatt |
214 |
Q |
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| T |
9806908 |
atgaagcataaaaggattgcaaagacaattggtcatagttcagttgaaatgaagctgttaaccttatgattatctcaagattcatttgttgtctcaaatt |
9806809 |
T |
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| Q |
215 |
ttaaagta |
222 |
Q |
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||||||| |
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| T |
9806808 |
ataaagta |
9806801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 114
Target Start/End: Complemental strand, 9807076 - 9806986
Alignment:
| Q |
24 |
ggtgctcttttaaatggtttccagattcatgaaaacgtctatgttgctagtcaggtgaaagtacgactaaccaagctgaaaccttttcaaa |
114 |
Q |
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| T |
9807076 |
ggtgctcttttaaatggttgccagattcatgaaaacatccctgttgctagtcaagtgaaagtacgattagcagagctggaacctattcaaa |
9806986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 219
Target Start/End: Original strand, 10606738 - 10606831
Alignment:
| Q |
126 |
aaggattgcaaagacaattggtcatggttcagttgaaatgaagctgctaactttatgatcgtctcaagattcatttgttgtctcaaattttaaa |
219 |
Q |
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| T |
10606738 |
aaggattgcaatgacaattggtcatagttcaattgaaatgaagctattaagctcatgataatctgaagattcatttggtgactcaaattataaa |
10606831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 10606872 - 10606935
Alignment:
| Q |
292 |
ttcagctgccttggttagtttattcgcatcaatatcctggtcatgttaactttggcactgatga |
355 |
Q |
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| T |
10606872 |
ttcagctgccttgtttagtttattccaattaatatccaggtccttttaactctggcactgatga |
10606935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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