View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_25 (Length: 340)
Name: NF5970_low_25
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 22 - 334
Target Start/End: Original strand, 23599046 - 23599352
Alignment:
| Q |
22 |
gtgcttttggagtatttaggtactttacatgtatgacataattgtgtttatgtaaaggtgtggttccaatggagatagagtgagaagaagaatgtgttat |
121 |
Q |
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| T |
23599046 |
gtgcttttggagtatttaggtactttacatgtatgacataactgtgtttatgtaaaggtgtggttccaatggagatagagtgagaagaagaatgtattat |
23599145 |
T |
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| Q |
122 |
atttataagactttgtatgcatacttggagttaacagaacatagcatcacgtacactttgttcatcagcatcacttttgcactttgtttagttctatcag |
221 |
Q |
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| T |
23599146 |
a------agacattgtatgcatacttggagttaacagaacatagcatcacgtacactttgttcatcagcatcactttcgcactttgtttagttttatcag |
23599239 |
T |
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| Q |
222 |
caaagttaccaatgttatacactgccagttcggcattgtgcgtgtgtttgtttcttgtactttgtttgagttatatattagctcgttctgtgagtatatt |
321 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23599240 |
caaagttacaaatgttatacactgccagttcggcattgtgcgtgtgtttgtttcttgtactttgtttgagttatatattagctcgttctctgagtatatt |
23599339 |
T |
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| Q |
322 |
gtatattcttcga |
334 |
Q |
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||| |||||||| |
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| T |
23599340 |
gtactttcttcga |
23599352 |
T |
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