View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5970_low_28 (Length: 309)
Name: NF5970_low_28
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 10 - 291
Target Start/End: Original strand, 7267471 - 7267756
Alignment:
| Q |
10 |
gcagagacaccgcgttagatagttgtgtttaaagattaacattttgttctttttgtggttttctacttgagatgcaagaaaggaagatgaatagcattcc |
109 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7267471 |
gcagagacaccgcgttagatagttatgtttaaagattaacattttgttctttttgtggttttctacttgagatgcaagaaaggaagatgagtagcattcc |
7267570 |
T |
|
| Q |
110 |
acataaagaataagtagaatgtgaacacacta----gtgatacaggcaatgtgtgaatttatcaacctcatagctcatacggttatgtgatttatgactt |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7267571 |
acataaagaataagtagaatgtgaacacactatgtagtgatacaggcaatgtgtgaatttatcaacctcatagctcatacggttatgtgatttatgactt |
7267670 |
T |
|
| Q |
206 |
ggtcgtatgaaaagttaaagctagaatgcaatttagtgatttaggaaaataaataacaaaatgaaccaatctttgagggatgtgtt |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7267671 |
ggtcgtatgaaaagttaaagctagaatgcaatttagtgatttaggaaaataaataacaaaatggaccaatctttgagggatgtgtt |
7267756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University