View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_29 (Length: 307)
Name: NF5970_low_29
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_29 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 19 - 307
Target Start/End: Original strand, 28752930 - 28753218
Alignment:
| Q |
19 |
gttgcagccggtgaattttttaaattcagcaaagaaatatatcatgtcacttgagcaactttctcctgcaggatctgtggcaactaagcaaatctgagac |
118 |
Q |
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| T |
28752930 |
gttgcagccggtgaattttttaaattcagcaaagaaatatatcatgtcacttgagcaactttctcctgcaggatctgtggcagctaagcaaatctgagac |
28753029 |
T |
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| Q |
119 |
tgcatctcaccaatcgatacattctgtaattgggcaaggtttccagtttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgttttc |
218 |
Q |
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| T |
28753030 |
tgcatctcaccaatcgatacattctgtaattgggcaaggtttccagtttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgtttcc |
28753129 |
T |
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| Q |
219 |
taccacgccgtgaagttgaattattagcagcaatttgggaattattgaaacaaccattagaagtattgtaagctgcctttggtttcctg |
307 |
Q |
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| T |
28753130 |
taccacgccgtgaagttgaattattagcagcaatttgggaattattgaaacaaccattagaagtattgtaagctgtcttcagtttcctg |
28753218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 165 - 306
Target Start/End: Original strand, 28753163 - 28753304
Alignment:
| Q |
165 |
tttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgttttctaccacgccgtgaagttgaattattagcagcaatttgggaattatt |
264 |
Q |
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| T |
28753163 |
tttgggaattattgaaacaaccattagaagtattgtaagctgtcttcagtttcctgccacgccgtgaagttgaattattagcagcaatttgggaattgtt |
28753262 |
T |
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| Q |
265 |
gaaacaaccattagaagtattgtaagctgcctttggtttcct |
306 |
Q |
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| T |
28753263 |
gaaacaatcattaggagtattataagctgcctttggtttcct |
28753304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 25 - 297
Target Start/End: Complemental strand, 44865817 - 44865545
Alignment:
| Q |
25 |
gccggtgaattttttaaattcagcaaagaaatatatcatgtcacttgagcaactttctcctgcaggatctgtggcaactaagcaaatctgagactgcatc |
124 |
Q |
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| T |
44865817 |
gccggtaaacttttcaaattctgaaaagaagtatatcatgtcactggagaaactttctcctgcaggatccttggcagctaagcatagttgagactgcatc |
44865718 |
T |
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| Q |
125 |
tcaccaatcgatacattctgtaattgggcaaggtttccagtttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgttttctaccac |
224 |
Q |
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| T |
44865717 |
tcatctaccgatacattctgtaactggatgtggtttccagtttggtaattattggaacaatcatcaaaagcattgtaagctagctttcgtttccttcctc |
44865618 |
T |
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| Q |
225 |
gccgtgaagttgaattattagcagcaatttgggaattattgaaacaaccattagaagtattgtaagctgcctt |
297 |
Q |
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| T |
44865617 |
gccgtgaagttgagttattaccagaaatttggtaactatggaaatcatcgtcagaagtatcataagctgcctt |
44865545 |
T |
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