View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_31 (Length: 306)
Name: NF5970_low_31
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 31409282 - 31409569
Alignment:
| Q |
1 |
atgtaaaggttaaaccgtgacaattattttaggacagatgaagtagtattaaataaattaaataattgaatcatagatcataactagagatgctcacata |
100 |
Q |
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| T |
31409282 |
atgtaaatgttaaaccgtgacaattattttaggacatataaagtagtattaaatgaattaaataattgaatcatggctcataaccggagatgctcacata |
31409381 |
T |
|
| Q |
101 |
gacaagtagatgtgatcaactttttgttcaacacaatttaaaacacctggcttcacta-ttgtttttgaannnnnnnnaccatatgccctaacaattata |
199 |
Q |
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| T |
31409382 |
gacaagtagatatgatcaactttttgttcaacgcaattcaaaacatctggcttcactatttgtttttgaa-attttttaccatatgccctaacaattata |
31409480 |
T |
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| Q |
200 |
cctaccacataaaaacaataaaaaatatcaattttaacccttttcaaaatcacattcactcacccaattttaacatggttgttttgtca |
288 |
Q |
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| T |
31409481 |
cctaccacatataaacaatcaaaaatatcaattttaacccttttcaaaatcacattcactcatccaattttaacatggttgttttgtca |
31409569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 33568107 - 33568151
Alignment:
| Q |
220 |
aaaaatatcaattttaacccttttcaaaatcacattcactcaccc |
264 |
Q |
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| T |
33568107 |
aaaaatatcaattttaacctttttcaaaatcacacccactcaccc |
33568151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 257
Target Start/End: Original strand, 41447744 - 41447788
Alignment:
| Q |
213 |
aacaataaaaaatatcaattttaacccttttcaaaatcacattca |
257 |
Q |
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| T |
41447744 |
aacaattaaaaatatcaattttaaccttttccaaaatcacattca |
41447788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 265
Target Start/End: Original strand, 27650193 - 27650246
Alignment:
| Q |
212 |
aaacaataaaaaatatcaattttaacccttttcaaaatcacattcactcaccca |
265 |
Q |
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|||| ||||||||||||||||||||||| |||||||||| | ||| ||||||| |
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| T |
27650193 |
aaaccataaaaaatatcaattttaaccccgttcaaaatcatactcattcaccca |
27650246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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