View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_32 (Length: 303)
Name: NF5970_low_32
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 55381975 - 55382263
Alignment:
| Q |
19 |
aataggtacgttccttactagttgaggagagacatgttgtgttgtgtctgtgtcatattgttattgtt-----------attacaaatacaaactttaat |
107 |
Q |
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| T |
55381975 |
aataggtacgttccttactagttgaggagagacatgttgtgttgtgtctgtgtcatattgttattgttattgttatgttattacaaatacaaactttaat |
55382074 |
T |
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| Q |
108 |
ttgcttatgtttaattcataacacaccatctcccggctccttcatttatgccacatgacctattattgttacacttcaactaccaactaattcaactctt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55382075 |
ttgcttatgtttaattcataacacaccatctcccggctacttcatttatggcacatgacctattattgttacacttcaactaccaactaattcaactctt |
55382174 |
T |
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| Q |
208 |
tcatttactcaatatgcatgggatacaatgcttttttaattatagataaacaaaaccaacttcacgtaataatttcccgtttcatctca |
296 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55382175 |
tcatttactcaacatgcatgggatacaatgcttttttaattatagataaacaaaaccaacttcacgtaataatttcccgtttcatctca |
55382263 |
T |
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