View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_33 (Length: 299)
Name: NF5970_low_33
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 33874829 - 33875035
Alignment:
| Q |
19 |
ctaagaccgataaaacgagcattgatttgaaggttcacgtcagataccaagctgaagtgctcattcctccttccatggaagtagaaaacaatgccatccg |
118 |
Q |
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| T |
33874829 |
ctaagaccgataaaacgagcattgatttgaaggttcacgtcagatactaagctgaagtgctcattcctccttccatggaagtagaaaacaatgccatccg |
33874928 |
T |
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| Q |
119 |
caccaatgaaccgagggtccaagcatgcagatccgcgaccattacaatttggtttacgacctgctctcatattcaatatataatgaacacttgttctatt |
218 |
Q |
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| T |
33874929 |
caccaacgaaccgagggtccaagcatgcagatccgcgaccattacaatttggtttacgacctgctctcatattcaatatataatgaacacttgttctatt |
33875028 |
T |
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| Q |
219 |
gcattat |
225 |
Q |
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||||||| |
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| T |
33875029 |
gcattat |
33875035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 209
Target Start/End: Original strand, 33879074 - 33879262
Alignment:
| Q |
19 |
ctaagaccgataaaacgagcattgatttgaaggttcacgtcagataccaagctgaagtgctcattcctccttccatggaagtagaaaacaatgccatccg |
118 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33879074 |
ctaaggccgataaaacgagcattgatttgaaggttggtgtcagataccaagctgaaatgctcattcctccttccatggaagtagaaaacaatgccatccg |
33879173 |
T |
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| Q |
119 |
caccaatgaaccgagggtccaagcatgcagatccgcgaccattacaatttggtttacgacctgctctcatattcaatatataatgaacact |
209 |
Q |
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| T |
33879174 |
caccaacaaaccgggggtccaaacatgcagatccgcgaccattacaatttgctttacggcct--attcacatccaatatataatgaacact |
33879262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 22718726 - 22718811
Alignment:
| Q |
88 |
cttccatggaagtagaaaacaatgccatccgcaccaatgaaccgagggtccaagcatgcagatccgcgaccattacaatttggttt |
173 |
Q |
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|||||||| ||||||||||| || ||||| || |||| || ||||| ||||||||||| ||||| || ||||| || |||||||| |
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| T |
22718726 |
cttccatgaaagtagaaaactattccatctgctccaacaaagcgaggatccaagcatgctgatccacggccattgcagtttggttt |
22718811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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