View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_34 (Length: 289)
Name: NF5970_low_34
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 4 - 274
Target Start/End: Complemental strand, 7093147 - 7092877
Alignment:
| Q |
4 |
aactaatggagacgaatcaatgtattcacatacgttttaaaatttatgcacaatcaatcattgttatcttcttctatttgttcaagttttgtagtaatcc |
103 |
Q |
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| T |
7093147 |
aactaatggagatgaatcaatgtgttcacatacgttttaaaatttatgcacaatcaatcattattatcttcttctatttgttcaagttttgtagtaatcc |
7093048 |
T |
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| Q |
104 |
ctaacacaaggtctaaccgatcatacgcagagccggttgaaaggtaaagccactaaagccctcgcttaaggcctacgaacaaaaaagacctcatatgcca |
203 |
Q |
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| T |
7093047 |
ctaacacaagttctaaccgatcatacgcagggccggttcaaaggtaaagccactaaaaccctcgtttaaggcctacaaacaaaaaagaccttatatgccg |
7092948 |
T |
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| Q |
204 |
ataaaaaggcctcatatatcaaaatttactttaaatctcccttactcttgaaaatcatatgtaacactttt |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7092947 |
ataaaaaggcctcatatatcaaaatttactttaaatctcccttactcttgaaaatcatatgtaacactttt |
7092877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 30484230 - 30484177
Alignment:
| Q |
184 |
aaaaaagacctcatatgccaataaaaa-ggcctcatatatcaaaatttacttta |
236 |
Q |
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| T |
30484230 |
aaaaaagacctcatatgccgataaaaaaggactcatatatcaaaatttgcttta |
30484177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 19839427 - 19839470
Alignment:
| Q |
146 |
ggtaaagccactaaagccctcgcttaaggcctacgaacaaaaaa |
189 |
Q |
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| T |
19839427 |
ggtaaagccactaaagccctcgctttaggcctaccaataaaaaa |
19839470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 35964005 - 35963965
Alignment:
| Q |
150 |
aagccactaaagccctcgcttaaggcctacgaacaaaaaag |
190 |
Q |
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| T |
35964005 |
aagccactaaagccctcgctttaggcttaccaacaaaaaag |
35963965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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