View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_36 (Length: 288)
Name: NF5970_low_36
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 39 - 283
Target Start/End: Complemental strand, 22450920 - 22450676
Alignment:
| Q |
39 |
ccttagtagactgaaatcacaagcaaaagtaaggagtttgacgactgattttttatttatttgagattttggttatagtaatgttagctgagatatatat |
138 |
Q |
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| T |
22450920 |
ccttagtagactgaaatcacaagcaaaagtaaggagtttgacgactgaatttttatttatttgagattttggttatagtaatggtagctgagatatatat |
22450821 |
T |
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| Q |
139 |
tgtactattgtagtaatggtaatgctgtcttggccttcactgtccttgttaccggtgccacactggctttttcaacacccaaatgttaatcattttgaag |
238 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22450820 |
tgtactattgtagtaatggtagtgctgtcttggccttcactgtccttgttaccggtgccacactggctttttcaacacccaaatgttaatcattttgaag |
22450721 |
T |
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| Q |
239 |
agttgtggtgacaacaccatgtccatttcaactgcctttgcttct |
283 |
Q |
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| T |
22450720 |
agttgtggtgacaacaccatgtccgtttcaactgccattgtttct |
22450676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 205 - 283
Target Start/End: Complemental strand, 6198763 - 6198685
Alignment:
| Q |
205 |
ctttttcaacacccaaatgttaatcattttgaagagttgtggtgacaacaccatgtccatttcaactgcctttgcttct |
283 |
Q |
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||||||||| |||||||||||||| ||||||||||| |||||||||||||| ||| ||||||||||||| ||| |||| |
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| T |
6198763 |
ctttttcaatacccaaatgttaattattttgaagagatgtggtgacaacactatggacatttcaactgccattgtttct |
6198685 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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