View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_38 (Length: 283)
Name: NF5970_low_38
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_38 |
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| [»] scaffold0774 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 32 - 270
Target Start/End: Original strand, 44922761 - 44922998
Alignment:
| Q |
32 |
aatatattctgattttctgttacttcatcctctcaacaacaacnnnnnnnnnnnnctagttttatttaatatgaagtataataaaataattaattttaat |
131 |
Q |
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| T |
44922761 |
aatatattctaattttctgttacttaatcctctcaacaacaacaaaaaaaaaaa-ctagttttatttaatatcaagtataataaaataattaattttaat |
44922859 |
T |
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| Q |
132 |
tgacaagtgaattatatgactgtgctttaaatcaaaccnnnnnnntgtatgtccaaaaaatcatattcaacttataaatgcttaatggttagttaattac |
231 |
Q |
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| T |
44922860 |
tgacaagtgaattatatgactgtgctttaaatcaaaccaaaaaaatgtatgtccagaaaatcatattcaacttataaatgcttaatggttagttaattac |
44922959 |
T |
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| Q |
232 |
catgtgcacaagtgaattttcttcctatccttttcacct |
270 |
Q |
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| T |
44922960 |
catgtgcacaagtgaattttcttcctatcattttcacct |
44922998 |
T |
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Target: scaffold0774 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0774
Description:
Target: scaffold0774; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 4754 - 4629
Alignment:
| Q |
141 |
aattatatgactgtgctttaaatcaaaccnnnnnnntgtatgtccaaaaaatcatattcaacttataaatgcttaatggttagttaattaccatgtgcac |
240 |
Q |
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| T |
4754 |
aattatatgattgtgctttaaatcaaaccaaaaaaatgtatgtccagaaaatcatattcagcttataaatgcttaatggttag----ttaccatgtgcac |
4659 |
T |
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| Q |
241 |
aagtgaattttcttcctatccttttcacct |
270 |
Q |
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| T |
4658 |
aagtgaatttccttcctatccttttcacct |
4629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 270
Target Start/End: Complemental strand, 20483143 - 20483012
Alignment:
| Q |
141 |
aattatatgactgtgctttaaatcaaaccnnnnnnntgtatgtccaaaaaatcatattcaacttataaatgcttaatggttagttaattaccatgt---- |
236 |
Q |
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| T |
20483143 |
aattatatgactgtgctttaaatcaaaccaaaaaaatgtatgtctagaaaatcatatttagcttataaatgcttaatg----gttaattaccatgtgcac |
20483048 |
T |
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| Q |
237 |
--gcacaagtgaattttcttcctatccttttcacct |
270 |
Q |
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| T |
20483047 |
aagcacaagtgaattttctttctatccttttcacct |
20483012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 141 - 270
Target Start/End: Original strand, 17387057 - 17387188
Alignment:
| Q |
141 |
aattatatgactgtgctttaaatcaaaccnnnnnnntgtatgtccaaaaaatcatattcaacttataaatgcttaatggttagttaattaccatgt---- |
236 |
Q |
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| T |
17387057 |
aattatatgattgtgctttaaatcaaaccaaaaaaatgtatgtccagaaaatcatatttagcttataaatgcttaatg----gttaattaccatgtgcac |
17387152 |
T |
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| Q |
237 |
--gcacaagtgaattttcttcctatccttttcacct |
270 |
Q |
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| T |
17387153 |
aagcacaagtgaattttctttctatccttttcacct |
17387188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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