View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5970_low_41 (Length: 274)

Name: NF5970_low_41
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5970_low_41
NF5970_low_41
[»] chr8 (3 HSPs)
chr8 (12-274)||(31408974-31409242)
chr8 (213-265)||(11637898-11637950)
chr8 (213-265)||(32855556-32855608)
[»] chr6 (4 HSPs)
chr6 (129-272)||(10599608-10599751)
chr6 (213-265)||(26567238-26567290)
chr6 (208-265)||(3623807-3623864)
chr6 (218-266)||(33821418-33821466)
[»] chr1 (2 HSPs)
chr1 (110-272)||(7268560-7268720)
chr1 (141-265)||(30385242-30385366)
[»] chr3 (3 HSPs)
chr3 (153-246)||(19901640-19901736)
chr3 (209-245)||(42049867-42049903)
chr3 (232-272)||(42225329-42225369)
[»] chr4 (4 HSPs)
chr4 (213-264)||(11794624-11794675)
chr4 (218-265)||(29585939-29585986)
chr4 (232-268)||(42154951-42154987)
chr4 (213-265)||(50205859-50205911)
[»] chr5 (1 HSPs)
chr5 (209-274)||(3050868-3050933)
[»] chr7 (1 HSPs)
chr7 (212-272)||(43213678-43213738)


Alignment Details
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 12 - 274
Target Start/End: Original strand, 31408974 - 31409242
Alignment:
Q  12 atgaaatacaatacatgataaaattcaaatttatgctctct--ttataacaaaagtcaaatgtatttgctctaaaa-ttaaaacaatttattaccccttc 108  Q
    |||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31408974 atgaaatacaatacatgaaaaaattcatatttatgctctctctttataacaaaagtcaaatgtatttgctctaaaagttaaaacaatttattaccccttc 31409073  T
Q  109 aatcttaaaataattgtcatagtttgatcatatgcattattcacataatctacttggactatattgttttactaatacataaagagaaatagttgtaaat 208  Q
    ||| ||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||    
T  31409074 aattttaaaataattgtcacagtttgatcatattcattattcacataatctatttggactatattgttttactaatacataaagagaaataattgtgaat 31409173  T
Q  209 aaga---tgttcgatttatctcaacaaatatttttaaaataccaactatttataatttttgctaataaa 274  Q
    ||||   |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  31409174 aagatgttgttcgatttatctcaacgaatatttttaaaataccaactatttataatttttgctaataaa 31409242  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 11637898 - 11637950
Alignment:
Q  213 tgttcgatttatctcaacaaatatttttaaaataccaactatttataattttt 265  Q
    |||| |||||||||| ||||||||||||||||||  || | ||||||||||||    
T  11637898 tgtttgatttatctcgacaaatatttttaaaatattaaatttttataattttt 11637950  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 32855608 - 32855556
Alignment:
Q  213 tgttcgatttatctcaacaaatatttttaaaataccaactatttataattttt 265  Q
    |||| ||||| |||||| |||||||||||||||| ||| | ||||||||||||    
T  32855608 tgtttgatttgtctcaataaatatttttaaaatatcaaatttttataattttt 32855556  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 129 - 272
Target Start/End: Original strand, 10599608 - 10599751
Alignment:
Q  129 agtttgatcatatgcattattcacataatctacttggactatattgttttactaatacataaagagaaatagttgtaaataagatgttcgatttatctca 228  Q
    |||||||||||||||| ||||||||||||||  || ||  ||||| ||   |||||| ||||||| | ||  | ||| ||||||||||||||||||||||    
T  10599608 agtttgatcatatgcaatattcacataatctttttcgatcatatttttaggctaataaataaagatagatgttagtatataagatgttcgatttatctca 10599707  T
Q  229 acaaatatttttaaaataccaactatttataatttttgctaata 272  Q
    | ||||||||| |||||| ||| | |||||||||| | ||||||    
T  10599708 ataaatattttcaaaatatcaattttttataatttctactaata 10599751  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 26567290 - 26567238
Alignment:
Q  213 tgttcgatttatctcaacaaatatttttaaaataccaactatttataattttt 265  Q
    ||||| |||||||||||||||||||||||||||| | |||  |||||||||||    
T  26567290 tgttcaatttatctcaacaaatatttttaaaatatctacttgttataattttt 26567238  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 3623864 - 3623807
Alignment:
Q  208 taagatgttcgatttatctcaacaaatatttttaaaataccaactatttataattttt 265  Q
    ||||||||| ||||| ||||||  ||||||||||||||| ||| | ||||||||||||    
T  3623864 taagatgtttgatttgtctcaatgaatatttttaaaatatcaaatttttataattttt 3623807  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 33821418 - 33821466
Alignment:
Q  218 gatttatctcaacaaatatttttaaaataccaactatttataatttttg 266  Q
    ||||||||| || |||||||||||||||| ||| | |||||||||||||    
T  33821418 gatttatcttaataaatatttttaaaatatcaaatttttataatttttg 33821466  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 272
Target Start/End: Original strand, 7268560 - 7268720
Alignment:
Q  110 atcttaaaataattgtcatagtttgatcatatgcattattcacataatctacttggactatattgttttactaatacataaagagaaatagttgtaaata 209  Q
    |||| ||||||||||||| | ||||| | | |||| ||||||||||||||  || ||| ||||| || |||||    ||||||| ||||  |||| ||||    
T  7268560 atctcaaaataattgtcacaatttgaccgtgtgcactattcacataatctcgtttgaccatatttttgtactat---ataaagacaaatgtttgtgaata 7268656  T
Q  210 agatgttcgatttatctcaacaaatatttt-taaaataccaactatttataatttttgctaata 272  Q
    | ||||||||||| ||||||  |||||||| ||||||| ||||| |||||||||||||||||||    
T  7268657 aaatgttcgatttgtctcaatgaatattttttaaaatatcaactttttataatttttgctaata 7268720  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 265
Target Start/End: Complemental strand, 30385366 - 30385242
Alignment:
Q  141 tgcattattcacataatctacttggactatattgttttactaatacataaagagaaatagttgtaaataagatgttcgatttatctcaacaaatattttt 240  Q
    |||| |||||||||| | ||||| ||| ||||| ||| ||||||| ||||| | ||||  | |||  |||||||||  |||| |||| |||||||||||     
T  30385366 tgcactattcacatagtttactttgaccatattttttaactaatatataaatacaaatgttagtatgtaagatgtttaatttctctcgacaaatattttc 30385267  T
Q  241 aaaataccaactatttataattttt 265  Q
    |||||| |||   ||||||||||||    
T  30385266 aaaatatcaaaattttataattttt 30385242  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 19901736 - 19901640
Alignment:
Q  153 ataatctacttggactatattgttttactaatacataaagagaaatagtt---gtaaataagatgttcgatttatctcaacaaatatttttaaaata 246  Q
    ||||||||||| ||  ||||||||||||||||| ||||||| ||||| |    ||| |||| ||||||||||||| ||||  |||||||||||||||    
T  19901736 ataatctactttgataatattgttttactaatatataaagacaaatattattagtatataaaatgttcgatttatatcaatgaatatttttaaaata 19901640  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 245
Target Start/End: Original strand, 42049867 - 42049903
Alignment:
Q  209 aagatgttcgatttatctcaacaaatatttttaaaat 245  Q
    ||||||||||||||||||||| || ||||||||||||    
T  42049867 aagatgttcgatttatctcaataagtatttttaaaat 42049903  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 42225329 - 42225369
Alignment:
Q  232 aatatttttaaaataccaactatttataatttttgctaata 272  Q
    |||||||||||||||| || | |||||||||||||||||||    
T  42225329 aatatttttaaaatactaaatttttataatttttgctaata 42225369  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 213 - 264
Target Start/End: Complemental strand, 11794675 - 11794624
Alignment:
Q  213 tgttcgatttatctcaacaaatatttttaaaataccaactatttataatttt 264  Q
    |||||||||| |||||| |||||||||||||||| ||| | |||||||||||    
T  11794675 tgttcgatttgtctcaataaatatttttaaaatatcaaatttttataatttt 11794624  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 218 - 265
Target Start/End: Complemental strand, 29585986 - 29585939
Alignment:
Q  218 gatttatctcaacaaatatttttaaaataccaactatttataattttt 265  Q
    |||||||||||| |||||||||||||||| ||| | ||||||||||||    
T  29585986 gatttatctcaataaatatttttaaaatatcaaatttttataattttt 29585939  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 42154951 - 42154987
Alignment:
Q  232 aatatttttaaaataccaactatttataatttttgct 268  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  42154951 aatatttttaaaatatcaactttttataatttttgct 42154987  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 50205859 - 50205911
Alignment:
Q  213 tgttcgatttatctcaacaaatatttttaaaataccaactatttataattttt 265  Q
    |||| |||||||||| ||||||||||||||||||  || | ||||||||||||    
T  50205859 tgtttgatttatctcgacaaatatttttaaaatattaaatttttataattttt 50205911  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 3050933 - 3050868
Alignment:
Q  209 aagatgttcgatttatctcaacaaatatttttaaaataccaactatttataatttttgctaataaa 274  Q
    |||| ||| ||||||||||||| ||||||||| ||||| ||| | || ||||||||| ||||||||    
T  3050933 aagaagttagatttatctcaacgaatatttttcaaatatcaaattttcataattttttctaataaa 3050868  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 272
Target Start/End: Original strand, 43213678 - 43213738
Alignment:
Q  212 atgttcgatttatctcaacaaatatttttaaaataccaactatttataatttttgctaata 272  Q
    ||||||||||||||| ||  ||||||||||||||| ||| | ||||| |||||| ||||||    
T  43213678 atgttcgatttatcttaatgaatatttttaaaatatcaattttttattatttttcctaata 43213738  T

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