View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5970_low_43 (Length: 271)

Name: NF5970_low_43
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5970_low_43
NF5970_low_43
[»] chr3 (8 HSPs)
chr3 (9-253)||(33587367-33587611)
chr3 (9-253)||(33594539-33594783)
chr3 (9-253)||(33601670-33601914)
chr3 (65-241)||(33608200-33608376)
chr3 (65-244)||(33615984-33616163)
chr3 (65-240)||(33626481-33626656)
chr3 (89-220)||(33621384-33621515)
chr3 (156-217)||(33562050-33562111)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 33587367 - 33587611
Alignment:
Q  9 gagatgaaccaaagtcataaagctcaccctttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaattct 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33587367 gagaagaaccaaagtcataaagctcaccctttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaattct 33587466  T
Q  109 tcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33587467 tcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagc 33587566  T
Q  209 tgggttagtgtcaactcttgtagctagcaaagtcactgcagctat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33587567 tgggttagtgtcaactcttgtagctagcaaagtcactgcagctat 33587611  T

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Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 33594539 - 33594783
Alignment:
Q  9 gagatgaaccaaagtcataaagctcaccctttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaattct 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33594539 gagaagaaccaaagtcataaagctcaccctttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaattct 33594638  T
Q  109 tcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33594639 tcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagc 33594738  T
Q  209 tgggttagtgtcaactcttgtagctagcaaagtcactgcagctat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33594739 tgggttagtgtcaactcttgtagctagcaaagtcactgcagctat 33594783  T

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Target: chr3; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 9 - 253
Target Start/End: Original strand, 33601670 - 33601914
Alignment:
Q  9 gagatgaaccaaagtcataaagctcaccctttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaattct 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601670 gagaagaaccaaagtcataaagctcaccctttttactaatgaaaaatgttatcaaattcaggaggtgttacaacaatggtgccatttctcaataaattct 33601769  T
Q  109 tcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33601770 tcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagc 33601869  T
Q  209 tgggttagtgtcaactcttgtagctagcaaagtcactgcagctat 253  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33601870 tgggttagtgtcaactcttgtagctagcaaagtcactgcagctat 33601914  T

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Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 65 - 241
Target Start/End: Original strand, 33608200 - 33608376
Alignment:
Q  65 ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat 164  Q
    |||||||||||| ||||| |||||||| |||||  | |||||||| |||||||||||||| |||||||||||| ||||||| |||||||| |||||||||    
T  33608200 ttcaggaggtgtcacaacgatggtgccgtttcttcaaaaattctttccagatattctaaggaaggcagctggtgctgaagtgaatatgtattgtgtgtat 33608299  T
Q  165 gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagt 241  Q
    || ||||| |  ||||| || |||||||| ||||| ||||||||||| ||||||||| | |||| ||||||||||||    
T  33608300 gatagtcaaacattgacattatttacgtcttctctttatctagctggattagtgtcatcccttgcagctagcaaagt 33608376  T

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Target: chr3; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 33615984 - 33616163
Alignment:
Q  65 ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat 164  Q
    |||||||||||||||||| ||||||||||||||| | |||||||| ||||| ||||| |||||||||||  || | ||||| |||||||| |||||||||    
T  33615984 ttcaggaggtgttacaacgatggtgccatttctccaaaaattctttccagacattctgagaaaggcagccagtgccgaagtgaatatgtattgtgtgtat 33616083  T
Q  165 gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaagtcac 244  Q
    || ||||| || |||||  | |||||||| ||||| ||||||||||| ||||||||| |  ||| |||||||||||||||    
T  33616084 gatagtcaaatattgacactatttacgtcttctctttatctagctggattagtgtcatccattgcagctagcaaagtcac 33616163  T

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Target: chr3; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 65 - 240
Target Start/End: Original strand, 33626481 - 33626656
Alignment:
Q  65 ttcaggaggtgttacaacaatggtgccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtat 164  Q
    |||||||||||| ||||| |||  ||||||||| || |||||||||||||| |||||||||||||||| ||||||| | || || |||||||||||||||    
T  33626481 ttcaggaggtgtcacaactatgaagccatttcttaaaaaattcttcccagacattctaagaaaggcagttggtactaaggtgaacatgtactgtgtgtat 33626580  T
Q  165 gacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagtgtcaactcttgtagctagcaaag 240  Q
    || ||||| || ||||| || || ||||| ||||| ||||||||||| ||  ||||  | ||||||||||||||||    
T  33626581 gatagtcaaatattgacattattcacgtcttctctttatctagctggatttatgtcgtcacttgtagctagcaaag 33626656  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 220
Target Start/End: Original strand, 33621384 - 33621515
Alignment:
Q  89 gccatttctcaataaattcttcccagatattctaagaaaggcagctggtactgaagtaaatatgtactgtgtgtatgacagtcagatgttgacgttgttt 188  Q
    ||||||||| || ||||| |||||| | ||||| ||||| |||||||||||| | || || ||||| ||||||||||| ||||| || ||||| || ||     
T  33621384 gccatttcttaaaaaattattcccatacattcttagaaatgcagctggtactaaggtgaacatgtattgtgtgtatgatagtcaaatattgacattattc 33621483  T
Q  189 acgtcctctctgtatctagctgggttagtgtc 220  Q
    || || || || ||||||||||| || |||||    
T  33621484 acatcttcactttatctagctggatttgtgtc 33621515  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 217
Target Start/End: Original strand, 33562050 - 33562111
Alignment:
Q  156 tgtgtgtatgacagtcagatgttgacgttgtttacgtcctctctgtatctagctgggttagt 217  Q
    ||||||||||| ||||| ||||| || || || |||||||| ||||||||||||||||||||    
T  33562050 tgtgtgtatgatagtcaaatgttaacattattcacgtcctcactgtatctagctgggttagt 33562111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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