View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_45 (Length: 260)
Name: NF5970_low_45
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 36 - 247
Target Start/End: Complemental strand, 41470603 - 41470392
Alignment:
| Q |
36 |
ttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgcatcatccaaccaaaagag |
135 |
Q |
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| T |
41470603 |
ttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgcatcatccaaccaaaagag |
41470504 |
T |
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| Q |
136 |
ttctcaaaacttaagtttgatacagtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgctcttcggccaaatacatcatttt |
235 |
Q |
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| T |
41470503 |
ttctcaaaacttaagtttgatacattaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgctcttcggccaaatacatcatttt |
41470404 |
T |
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| Q |
236 |
ttcatcggccct |
247 |
Q |
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| T |
41470403 |
ttcatcggccct |
41470392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 40751756 - 40751535
Alignment:
| Q |
20 |
ctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgcat |
119 |
Q |
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| T |
40751756 |
ctttcagctgttctatctccaattccaatgcttgttttgcatccagtcctctctccaggtcatgaattttcttgtgaagtttctccttttctttctgcaa |
40751657 |
T |
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| Q |
120 |
catccaaccaaaagagttctcaaaacttaagtttgataca-gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgctcttcg |
218 |
Q |
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| T |
40751656 |
catccaaccaaaagagtcctcaaaacctaagtat-atacatgaaactgaattaaaaactgtcgataataggaaaatgaaatgcgtgccttatgttcttcc |
40751558 |
T |
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| Q |
219 |
gccaaatacatcattttttcatc |
241 |
Q |
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| T |
40751557 |
gccaaatacatcattttttcatc |
40751535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 41484507 - 41484286
Alignment:
| Q |
20 |
ctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgcat |
119 |
Q |
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|||| ||| |||| || ||||||||||||| ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41484507 |
cttttagccgttctatctccaattccaatgcctgtttagcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgcaa |
41484408 |
T |
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| Q |
120 |
catccaaccaaaagagttctcaaaacttaagtttgataca-gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgctcttcg |
218 |
Q |
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| T |
41484407 |
catccaaccaaaagagtccttaaaacttaagtat-atacatgcaactgaattaaaaactgtaggtaataggaaaatgaaaagtgtgccttatgttcttct |
41484309 |
T |
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| Q |
219 |
gccaaatacatcattttttcatc |
241 |
Q |
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| T |
41484308 |
gccaagtacatcattttttcatc |
41484286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 41477501 - 41477280
Alignment:
| Q |
20 |
ctttcagctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgcat |
119 |
Q |
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| T |
41477501 |
ctttcagccgttctatctccaactccaatgcttgttttgcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctccttttctttctgcaa |
41477402 |
T |
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| Q |
120 |
catccaaccaaaagagttctcaaaacttaagtttgataca-gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgctcttcg |
218 |
Q |
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||||||||||||||||| ||||||||| |||| | ||| | || |||||| |||| |||||||||||||||||| ||||| ||||||||| ||||| |
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| T |
41477401 |
catccaaccaaaagagtcctcaaaactgaagtat-ataaatgttactgaattaaaaactgtagataaaaggaaagtgaaatacttgccttatgttcttca |
41477303 |
T |
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| Q |
219 |
gccaaatacatcattttttcatc |
241 |
Q |
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|||||| |||||||||||||||| |
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| T |
41477302 |
gccaaagacatcattttttcatc |
41477280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 29 - 245
Target Start/End: Original strand, 16408219 - 16408435
Alignment:
| Q |
29 |
gttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgcatcatccaacc |
128 |
Q |
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|||||| |||||| ||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
16408219 |
gttcaacttccaactccaatgcttgttttgcatcaagtcctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgcaacatacaacc |
16408318 |
T |
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| Q |
129 |
aaaagagttctcaaaacttaagtttgataca-gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgctcttcggccaaatac |
227 |
Q |
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| T |
16408319 |
aaaatagtcctcaaaacttgag-tggacacatgtaactgaattaaaaactcgagataaaagaaaaatgaaatctgtgccttatggtcttcagctaaacgc |
16408417 |
T |
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| Q |
228 |
atcattttttcatcggcc |
245 |
Q |
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|||||||||||||||||| |
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| T |
16408418 |
atcattttttcatcggcc |
16408435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 52481168 - 52481059
Alignment:
| Q |
27 |
ctgttcaatttccaattccaatgtttgttttgcaccaagacctctctccaggtcatgaattttcttgtgaagtttctctttttctttctgcatcatccaa |
126 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
52481168 |
ctgttcaatttccaattccaatgcttgttttgcatcaagacctctctgtaggtcatggattttcttgtgaagtttctccttttctttctgcaacatccaa |
52481069 |
T |
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| Q |
127 |
ccaaaagagt |
136 |
Q |
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| T |
52481068 |
ccaaaagagt |
52481059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 52472391 - 52472306
Alignment:
| Q |
160 |
gtaactgaactaaatactgtagataaaaggaaaacgaaatgtgtgccttatgctcttcggccaaatacatcattttttcatcggcc |
245 |
Q |
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||||||||| |||||| |||| || ||||||||| ||||| |||||||||| ||||| ||||||| ||||||||||||||||||| |
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| T |
52472391 |
gtaactgaattaaatattgtacatgaaaggaaaatcaaatgcgtgccttatgttcttcagccaaatgcatcattttttcatcggcc |
52472306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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