View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_48 (Length: 253)
Name: NF5970_low_48
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_48 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 79 - 243
Target Start/End: Complemental strand, 33587018 - 33586854
Alignment:
| Q |
79 |
ggaagaaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgttatatttccgtcga |
178 |
Q |
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| T |
33587018 |
ggaagaaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataaccgagagtgttatatttccgtcga |
33586919 |
T |
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| Q |
179 |
agccattcgaaggtgcatcaatggcaaatcccccacctgccattttcaaccttgtcctctctgtg |
243 |
Q |
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| T |
33586918 |
agccattcgaaggtgcatcaatggcaaatcccccacctgccattttcaaccttgtcctctctgtg |
33586854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 33594190 - 33594033
Alignment:
| Q |
79 |
ggaagaaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgttatatttccgtcga |
178 |
Q |
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| T |
33594190 |
ggaagaaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgttatctttccatcaa |
33594091 |
T |
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| Q |
179 |
agccattcgaaggtgcatcaatggcaaatcccccacctgccattttcaaccttgtcct |
236 |
Q |
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| T |
33594090 |
agccattggaaggtgcatcaatggcaaaccctccacctgccattttcaaccttctcct |
33594033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 33601321 - 33601164
Alignment:
| Q |
79 |
ggaagaaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgttatatttccgtcga |
178 |
Q |
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| T |
33601321 |
ggaagaaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgttatctttccatcaa |
33601222 |
T |
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| Q |
179 |
agccattcgaaggtgcatcaatggcaaatcccccacctgccattttcaaccttgtcct |
236 |
Q |
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| T |
33601221 |
agccattggaaggtgcatcaatggcaaaccctccacctgccattttcaaccttctcct |
33601164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 33561780 - 33561697
Alignment:
| Q |
84 |
aaaacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgttat |
167 |
Q |
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| T |
33561780 |
aaaacctgaaattccaaggtcatatccaaaaatgagtccactagatgctgcaacaatgcaagtgatgacaactgagagtgttat |
33561697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 33587244 - 33587200
Alignment:
| Q |
4 |
agcttgtgcaattatgttaatttctctaatgattttgacatttta |
48 |
Q |
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| T |
33587244 |
agcttgtgcaattatgttaatttctttaatgattttgacatttta |
33587200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 33594416 - 33594372
Alignment:
| Q |
4 |
agcttgtgcaattatgttaatttctctaatgattttgacatttta |
48 |
Q |
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| T |
33594416 |
agcttgtgcaattatgttaatttctttaatgattttgacatttta |
33594372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 33601547 - 33601503
Alignment:
| Q |
4 |
agcttgtgcaattatgttaatttctctaatgattttgacatttta |
48 |
Q |
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| T |
33601547 |
agcttgtgcaattatgttaatttctttaatgattttgacatttta |
33601503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 166
Target Start/End: Complemental strand, 33608078 - 33607998
Alignment:
| Q |
86 |
aacctgaaatcccaatgtcatatccaaaaatgagtccactagatgcagcaacgatacaagtaatgataactgagagtgtta |
166 |
Q |
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|||||||||| ||||||||||||||||||| || ||||| || ||||||||||| || |||||||| | ||| ||||||| |
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| T |
33608078 |
aacctgaaattccaatgtcatatccaaaaagaagaccactggaagcagcaacgatgcatgtaatgatgattgaaagtgtta |
33607998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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