View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_50 (Length: 251)
Name: NF5970_low_50
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_50 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 27 - 230
Target Start/End: Original strand, 45934801 - 45935005
Alignment:
| Q |
27 |
acaactcgttttctttgctctacattaatttttgcaagttttaccccactgtctaactatct-caggnnnnnnnnatcgtaggtattcacactttcttgg |
125 |
Q |
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| T |
45934801 |
acaactcgttttctttgctctacattaatttttgcaagttttactccactgtctaactatcttcaggttttttttatcgtaggtattcgcactttcttgg |
45934900 |
T |
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| Q |
126 |
gcagtcttggttatagtccttatcgtcttaaaggtatgtgattttgtatatgcaaaaccattcctatttgcctaaattaaaacataataaaatacaaatt |
225 |
Q |
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| T |
45934901 |
gcagtcttggttatagtccttatcgtcttaaaggtatgtgattttgtatatgcaaaaccattcctatttgcctaaattaaaacataataaaatacaaatt |
45935000 |
T |
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| Q |
226 |
ttagt |
230 |
Q |
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||||| |
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| T |
45935001 |
ttagt |
45935005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 220 - 251
Target Start/End: Original strand, 45935007 - 45935038
Alignment:
| Q |
220 |
caaattttagtcataaaacatttcttttcaat |
251 |
Q |
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| T |
45935007 |
caaattttagtcataaaacatttcttttcaat |
45935038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 15817023 - 15817183
Alignment:
| Q |
13 |
aatattctggtacaacaactcgttttctttgctctacattaatttttgcaagttttaccccactgtctaactatctcaggnnnnnnnnatcgtaggtatt |
112 |
Q |
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| T |
15817023 |
aatattctggtacaacaacttgttttctttgttctaccttaatttttgcaaattttacccctccgtctaactacctttggtttttcttatcataggtatt |
15817122 |
T |
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| Q |
113 |
cacactttcttgggcagtcttggttatagtccttatcgtcttaaaggtatgtgattttgta |
173 |
Q |
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| T |
15817123 |
cgcactttcttgggtagttttggttatagtccttatcgtcttaaaggtatgtacttttgta |
15817183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 15817207 - 15817263
Alignment:
| Q |
192 |
tttgcctaaattaaaacataataaaatacaaattttagtcataaaacatttcttttc |
248 |
Q |
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| T |
15817207 |
tttgcctaaattaaagcctaataacatacaaattttattcaaaaaacatttcttttc |
15817263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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