View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_56 (Length: 248)
Name: NF5970_low_56
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 3641957 - 3641708
Alignment:
| Q |
1 |
tttactttatctatgtgatttaatgatatttgtatagattccttctagccaccaggtaacatcagtgaaaatatatga---agtttgatccggtgacatc |
97 |
Q |
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| T |
3641957 |
tttactttatctatgtgatttaatgttatttgtatagattccttctagccaccaggtaacatcagtgaaaatatatgatgaagtttgatccggtgacatc |
3641858 |
T |
|
| Q |
98 |
gtgaatttgattcttgcaacaacacgttggccaaattttgacttcatttataactt---------ttgatacgatcctttctctctgtaaacactatatg |
188 |
Q |
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|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
3641857 |
gtgaatttgattcttgtaacaacatgttggccaaattttgacttcatttataacttttgaaccttttgatacgatcctttctctctgtaaacattatatg |
3641758 |
T |
|
| Q |
189 |
gttagtctcttaaaattcattcagagtctgctgaattcagcaactgccct |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3641757 |
gttagtctcttaaaattcattcagagtctgctgaattcagcaactgccct |
3641708 |
T |
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