View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_62 (Length: 215)
Name: NF5970_low_62
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_62 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 17 - 201
Target Start/End: Complemental strand, 37580921 - 37580737
Alignment:
| Q |
17 |
acatgcttcatgaattcagcgtcccaagccttaagatcatccaaactcaccgcagcgtcccagcctgcttccacattcttctgaacctcaagatcattgg |
116 |
Q |
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| T |
37580921 |
acatgcttcatgaattcagcgtcccaagccttaagatcatccaaactcaccgcagcgtcccagcctgcttccacattcttctgaacctcaagatcattgg |
37580822 |
T |
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| Q |
117 |
aactcgcagactccaaaagcatagcgttatcaaccttaacgaaatcagcatcccaacaattaagatcatcagaactagcctttgc |
201 |
Q |
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| T |
37580821 |
aactcgcagactccaaaagcatagccttatcaaccttaacgaaatcagcatcccaacaattaagatcatcagaactagcctttgc |
37580737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 172
Target Start/End: Original strand, 37466497 - 37466526
Alignment:
| Q |
143 |
ttatcaaccttaacgaaatcagcatcccaa |
172 |
Q |
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| T |
37466497 |
ttatcaaccttaacgaaatcagcatcccaa |
37466526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 55118915 - 55118878
Alignment:
| Q |
20 |
tgcttcatgaattcagcgtcccaagccttaagatcatc |
57 |
Q |
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| T |
55118915 |
tgcttcatgaattcagcgtcccaagccttgagatcatc |
55118878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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