View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5970_low_7 (Length: 524)

Name: NF5970_low_7
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5970_low_7
NF5970_low_7
[»] scaffold0083 (2 HSPs)
scaffold0083 (16-373)||(50438-50795)
scaffold0083 (404-514)||(50805-50915)
[»] chr3 (39 HSPs)
chr3 (146-354)||(10076299-10076505)
chr3 (405-514)||(10214793-10214903)
chr3 (405-514)||(10223534-10223644)
chr3 (406-514)||(10103857-10103966)
chr3 (283-447)||(11768325-11768494)
chr3 (16-110)||(10364431-10364525)
chr3 (16-110)||(10434677-10434771)
chr3 (416-514)||(10123657-10123755)
chr3 (416-514)||(10180311-10180409)
chr3 (139-222)||(10376658-10376741)
chr3 (140-222)||(10364611-10364693)
chr3 (16-123)||(9838190-9838297)
chr3 (16-123)||(9849068-9849175)
chr3 (416-514)||(10256426-10256524)
chr3 (16-87)||(10376478-10376549)
chr3 (16-85)||(10579968-10580037)
chr3 (16-87)||(10505150-10505221)
chr3 (16-88)||(13170395-13170467)
chr3 (16-88)||(13289029-13289101)
chr3 (16-88)||(13332268-13332340)
chr3 (283-362)||(10031125-10031204)
chr3 (283-368)||(9838029-9838114)
chr3 (283-368)||(9848907-9848992)
chr3 (17-86)||(10076632-10076701)
chr3 (416-468)||(10028802-10028854)
chr3 (16-88)||(13160344-13160416)
chr3 (16-88)||(13343453-13343525)
chr3 (283-368)||(9837824-9837907)
chr3 (283-368)||(9848702-9848785)
chr3 (283-368)||(10126060-10126145)
chr3 (283-362)||(10657930-10658006)
chr3 (283-368)||(10662639-10662721)
chr3 (283-344)||(10104042-10104100)
chr3 (283-322)||(10214934-10214972)
chr3 (283-322)||(10223675-10223713)
chr3 (283-362)||(10516630-10516706)
chr3 (283-318)||(10123754-10123790)
chr3 (283-318)||(10256523-10256559)
chr3 (293-349)||(10259874-10259930)
[»] chr5 (4 HSPs)
chr5 (405-514)||(26793376-26793486)
chr5 (428-514)||(26818892-26818979)
chr5 (16-88)||(19956981-19957054)
chr5 (283-322)||(26793517-26793555)
[»] chr2 (1 HSPs)
chr2 (16-88)||(26906261-26906333)
[»] chr8 (1 HSPs)
chr8 (16-107)||(44958311-44958402)
[»] scaffold0002 (2 HSPs)
scaffold0002 (16-88)||(136521-136593)
scaffold0002 (16-88)||(146572-146644)


Alignment Details
Target: scaffold0083 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 16 - 373
Target Start/End: Original strand, 50438 - 50795
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaaccaactag 115  Q
    |||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50438 caagtttctcaactaaggtctgaacagttgcagtgagaaaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaaccaactag 50537  T
Q  116 tatgaaattttgatggaaattacgagcaatgactcaaagaagagtcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50538 tatgaaattttgatggaaattacgagcaatgactcaaagaagactcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtg 50637  T
Q  216 tatatagtaaaggtaaactcatgaagacttagctgtatgtgaattaatggttaacagtactgtatttaaagctggaaagcaaagctcagcagtggttaat 315  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50638 catatagtaaaggtaaactcatgaagacttagctgtatgtgaattaatggttaacagtactgtatttaaagctggaaagcaaagctcagcagtggttaat 50737  T
Q  316 attggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgcagtcac 373  Q
    |||||||| |||||  |||||||||||||||||| |||||||||||||||||||||||    
T  50738 attggacccacatcccacaaaataattgatacaaagaaaaaggaaaaattgcagtcac 50795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 404 - 514
Target Start/End: Original strand, 50805 - 50915
Alignment:
Q  404 attatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatactaaaataaatgtatcatgttgtcatttttct 503  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  50805 attatatacatttttacttttggaaagtgattcaaatatgcaatttctagttaaactcctctcatatacgaaaataaatgtatcatgttgtcatttttct 50904  T
Q  504 tatcatctgtg 514  Q
    |||||||||||    
T  50905 tatcatctgtg 50915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 7e-41; HSPs: 39)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 146 - 354
Target Start/End: Complemental strand, 10076505 - 10076299
Alignment:
Q  146 gactcaaagaagagtcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtgtatatagtaaa-ggtaaactcatgaagact 244  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||| ||||||||||| |||||||||||| |||| ||||| |||| ||||| |||||||    
T  10076505 gactcaaagaagactcgcttgtgaatgaatggataacactaacagcgctgtttttgagtggttggaagtgcatattgtaaagggtagactcaagaagact 10076406  T
Q  245 tagctgtatgtgaattaatggttaacagtactgtattt-aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattg 343  Q
    ||  ||||||||||||||||   ||    ||   |||| |||||||||||| ||||||||| |||||||||||||||||| |||||  ||||||||||||    
T  10076405 tatatgtatgtgaattaatgaagaa----acaaaatttgaaagctggaaagtaaagctcagtagtggttaatattggacccacatcccacaaaataattg 10076310  T
Q  344 atacaatgaaa 354  Q
    |||||| ||||    
T  10076309 atacaaggaaa 10076299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 10214903 - 10214793
Alignment:
Q  405 ttatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttct 503  Q
    ||||||| |||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  10214903 ttatatacatttttaccttaggaaagtgagtcaaatatgcaatttctagttaaagtcctctcatatactaaaaataaatgtatcatattgtcatttttct 10214804  T
Q  504 tatcatctgtg 514  Q
    ||||| |||||    
T  10214803 tatcacctgtg 10214793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 10223644 - 10223534
Alignment:
Q  405 ttatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttct 503  Q
    ||||||| |||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  10223644 ttatatacatttttaccttaggaaagtgagtcaaatatgcaatttctagttaaagtcctctcatatactaaaaataaatgtatcatattgtcatttttct 10223545  T
Q  504 tatcatctgtg 514  Q
    ||||| |||||    
T  10223544 tatcacctgtg 10223534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 406 - 514
Target Start/End: Complemental strand, 10103966 - 10103857
Alignment:
Q  406 tatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttctt 504  Q
    |||||| ||||||||||| || |||||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||    
T  10103966 tatatacatttttactttaggaaagtgagtcaaatatgcaatttctagttaaattcctctcatatactaaaaataaatgtatcatattgtcatttttctt 10103867  T
Q  505 atcatctgtg 514  Q
    |||| |||||    
T  10103866 atcacctgtg 10103857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 283 - 447
Target Start/End: Complemental strand, 11768494 - 11768325
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca---gtcactaaaac 379  Q
    ||||| ||||||||||| ||| || |||||||||||||||| |||||  |||||||||||||||||| |||||||||||| |||||    | | ||||      
T  11768494 aaagcgggaaagcaaagttcaccattggttaatattggacctacatcccacaaaataattgatacaaagaaaaaggaaaagttgcacacttaattaaagg 11768395  T
Q  380 catcggaatc-ttaaatagcatata-attatatatatttttacttttggtaagtgattcaaatatgcaat 447  Q
    ||||| |||| |||||||||| |||  ||||||| |||||||||||||| ||||||||||||||||||||    
T  11768394 catcgaaatctttaaatagcagatactttatatacatttttacttttggaaagtgattcaaatatgcaat 11768325  T

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Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 10364431 - 10364525
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaacca 110  Q
    |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||   |||||||||||| |||||||    
T  10364431 caagtttctcaactaaggtctgaacagttgcagagagaaaagctcctcctatcatagttgcagccatcttctgttgatattgttaaagcaaacca 10364525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 16 - 110
Target Start/End: Original strand, 10434677 - 10434771
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaacca 110  Q
    |||||||||| ||||| || ||||||||||||||||||||||||||||| ||||||| |||||||||||||||  |||||||||||| |||||||    
T  10434677 caagtttctcaactaaggtttgaacagttgcagagagaaaagctcctcctatcatagttgcagccatcttctaatgatattgttaaagcaaacca 10434771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 416 - 514
Target Start/End: Complemental strand, 10123755 - 10123657
Alignment:
Q  416 tttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttcttatcatctgtg 514  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||  ||||||||||||||||| |||||    
T  10123755 tttactttaggaaagtgattcaaatatgcaatttctcgttaaagtcctctcatatactaaaaataaatgtagcat-atgtcatttttcttatcacctgtg 10123657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 416 - 514
Target Start/End: Complemental strand, 10180409 - 10180311
Alignment:
Q  416 tttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttcttatcatctgtg 514  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||  ||||||||||||||||| |||||    
T  10180409 tttactttaggaaagtgattcaaatatgcaatttctcgttaaagtcctctcatatactaaaaataaatgtagcat-atgtcatttttcttatcacctgtg 10180311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 139 - 222
Target Start/End: Original strand, 10376658 - 10376741
Alignment:
Q  139 gagcaatgactcaaagaagagtcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtgtatatag 222  Q
    |||||| ||||||||||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  10376658 gagcaaagactcaaagaagactcgcttgtgagtgaatggataacactaacagtgctgtttttgaatggttggaagtgcatatag 10376741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 10364611 - 10364693
Alignment:
Q  140 agcaatgactcaaagaagagtcggttgtgaatgaatggataacactgacagtgctgtttttgaatggttggaagtgtatatag 222  Q
    ||||| ||||||||||||| | | |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  10364611 agcaaagactcaaagaagacttgcttgtgaatgaatggataacactaacagtgctgtttttgaatggttggaagtgcatatag 10364693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 9838297 - 9838190
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaaccaactag 115  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||   ||| |||| ||| |||| ||  |||    
T  9838297 caagtttctcaactaaggtctgaacagttgcagagagaaaagcgcctccaatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcaggtag 9838198  T
Q  116 tatgaaat 123  Q
    ||||||||    
T  9838197 tatgaaat 9838190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 9849175 - 9849068
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaaccaactag 115  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||   ||| |||| ||| |||| ||  |||    
T  9849175 caagtttctcaactaaggtctgaacagttgcagagagaaaagcgcctccaatcatagttgcagccatcttctgttgatcttgtaaaagcaaatcaggtag 9849076  T
Q  116 tatgaaat 123  Q
    ||||||||    
T  9849075 tatgaaat 9849068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 416 - 514
Target Start/End: Complemental strand, 10256524 - 10256426
Alignment:
Q  416 tttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttcttatcatctgtg 514  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||| |||  ||||||||||||||||| |||||    
T  10256524 tttactttaggaaagtgattcaaatatgcaatttctcgttaaagtcctctcatatactaaaaataaacgtagcat-atgtcatttttcttatcacctgtg 10256426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 10376478 - 10376549
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttct 87  Q
    |||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||    
T  10376478 caagtttctcaactaaggtctgaacagttgcagagagaaaagcacctcctatcatagttgcagccatcttct 10376549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 10580037 - 10579968
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatctt 85  Q
    |||||||||| ||||| |||||||||||||||||||| ||||| ||||||||||||| ||||||||||||    
T  10580037 caagtttctcaactaaggtctgaacagttgcagagaggaaagcacctccaatcatagttgcagccatctt 10579968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 10505221 - 10505150
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttct 87  Q
    ||||||| || ||||| ||||||||||||||||||||||||| |||||| ||||||| ||||||||||||||    
T  10505221 caagtttgtcaactaaggtctgaacagttgcagagagaaaagttcctcctatcatagttgcagccatcttct 10505150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 13170467 - 13170395
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttcta 88  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||| | || || |||||||||||||||    
T  13170467 caagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaagttgcagccatcttcta 13170395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 13289101 - 13289029
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttcta 88  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||| | || || ||||||||| |||||    
T  13289101 caagtttctcaactaaagtctgaacagtagcagagagaaaagctcctcccaccaaagttgcagccattttcta 13289029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 13332340 - 13332268
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttcta 88  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||| | || || |||||||||||||||    
T  13332340 caagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaagttgcagccatcttcta 13332268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 10031204 - 10031125
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaa 362  Q
    ||||||||||||||||||||| || || ||||||||||||| |||||   ||||||||||||||||| ||||||| ||||    
T  10031204 aaagctggaaagcaaagctcatcattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaa 10031125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 9838114 - 9838029
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 368  Q
    ||||||||||||||||||| | || || ||||||||||||| |||||   ||||||||||||||||| ||||||| |||| |||||    
T  9838114 aaagctggaaagcaaagcttaacattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaagttgca 9838029  T

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Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 9848992 - 9848907
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 368  Q
    ||||||||||||||||||| | || || ||||||||||||| |||||   ||||||||||||||||| ||||||| |||| |||||    
T  9848992 aaagctggaaagcaaagcttaacattgtttaatattggacccacatccctcaaaataattgatacaaagaaaaagaaaaagttgca 9848907  T

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Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 10076701 - 10076632
Alignment:
Q  17 aagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttc 86  Q
    ||||||||| ||||| |||||||||||||||  ||||||||| ||||| ||||||| |||||||||||||    
T  10076701 aagtttctcaactaaggtctgaacagttgcatggagaaaagcacctcctatcatagttgcagccatcttc 10076632  T

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Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 416 - 468
Target Start/End: Complemental strand, 10028854 - 10028802
Alignment:
Q  416 tttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcat 468  Q
    |||||||| || |||||||||||||||||||||||| ||||||||||||||||    
T  10028854 tttactttaggaaagtgattcaaatatgcaatttctcgttaaagtcctctcat 10028802  T

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Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 13160416 - 13160344
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttcta 88  Q
    |||||||| | ||||||||||||||||| |||||||||||||| ||||| | || || |||||||||||||||    
T  13160416 caagtttcgcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaagttgcagccatcttcta 13160344  T

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Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 13343525 - 13343453
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttcta 88  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||| | || || ||||||||| |||||    
T  13343525 caagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaagttgcagccattttcta 13343453  T

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Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 9837907 - 9837824
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 368  Q
    |||||||||||||||||||   || || ||||||||||||| |||||  |||||||||||||| ||| |||||||||||| |||||    
T  9837907 aaagctggaaagcaaagctt--cattgtttaatattggacccacatcccacaaaataattgatgcaaagaaaaaggaaaagttgca 9837824  T

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Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 9848785 - 9848702
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 368  Q
    |||||||||||||||||||   || || ||||||||||||| |||||  |||||||||||||| ||| |||||||||||| |||||    
T  9848785 aaagctggaaagcaaagctt--cattgtttaatattggacccacatcccacaaaataattgatgcaaagaaaaaggaaaagttgca 9848702  T

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Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 10126145 - 10126060
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 368  Q
    ||||||||||||||||| ||| || || ||||||||||||| |||||   ||||||||||||||||| | ||||| |||| |||||    
T  10126145 aaagctggaaagcaaaggtcatcattgtttaatattggacccacatccctcaaaataattgatacaaagcaaaagaaaaagttgca 10126060  T

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Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 10658006 - 10657930
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaa 362  Q
    ||||||||||||||||| ||| ||||| |||||   ||||| ||||| | ||||||||||||||||| ||||||||||||    
T  10658006 aaagctggaaagcaaaggtcatcagtgattaat---ggacccacatccttcaaaataattgatacaaagaaaaaggaaaa 10657930  T

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Target: chr3; HSP #32
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 283 - 368
Target Start/End: Complemental strand, 10662721 - 10662639
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaaattgca 368  Q
    ||||||||||||||||| ||| ||||| |||||   ||||| ||||| | |||||||||| |||||| |||||||||||| |||||    
T  10662721 aaagctggaaagcaaagttcatcagtgattaat---ggacccacatccttcaaaataattaatacaaagaaaaaggaaaagttgca 10662639  T

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Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 344
Target Start/End: Complemental strand, 10104100 - 10104042
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattga 344  Q
    |||||||||||||||||||||||||| |||||||||||||  |||||  |||||||||||||    
T  10104100 aaagctggaaagcaaagctcagcagt-gttaatattggac--acatcccacaaaataattga 10104042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 10214972 - 10214934
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggac 322  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  10214972 aaagctggaaagcaaagctcagcagt-gttaatattggac 10214934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 10223713 - 10223675
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggac 322  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  10223713 aaagctggaaagcaaagctcagcagt-gttaatattggac 10223675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 283 - 362
Target Start/End: Complemental strand, 10516706 - 10516630
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaatgaaaaaggaaaa 362  Q
    |||||||||||||| || ||| ||||| ||| |   ||||| ||||| | ||||||||||||||||| ||||||||||||    
T  10516706 aaagctggaaagcataggtcatcagtgattact---ggacccacatccttcaaaataattgatacaaagaaaaaggaaaa 10516630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 318
Target Start/End: Complemental strand, 10123790 - 10123754
Alignment:
Q  283 aaagctggaaagcaaa-gctcagcagtggttaatatt 318  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10123790 aaagctggaaagcaaaagctcagcagtggttaatatt 10123754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 283 - 318
Target Start/End: Complemental strand, 10256559 - 10256523
Alignment:
Q  283 aaagctggaaagcaaa-gctcagcagtggttaatatt 318  Q
    |||||||||||||||| ||||||||||||||||||||    
T  10256559 aaagctggaaagcaaaagctcagcagtggttaatatt 10256523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 10259930 - 10259874
Alignment:
Q  293 agcaaagctcagcagtggttaatattggaccgacatcttacaaaataattgatacaa 349  Q
    ||||||| ||| || || ||||||||||||| ||||| | |||||||||||||||||    
T  10259930 agcaaaggtcatcattgtttaatattggacccacatccttcaaaataattgatacaa 10259874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 405 - 514
Target Start/End: Complemental strand, 26793486 - 26793376
Alignment:
Q  405 ttatatatatttttacttttggtaagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttct 503  Q
    ||||||| |||||||| || || |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  26793486 ttatatacatttttaccttaggaaagtgagtcaaatatgcaatttctagttaaagtcctctcatatactaaaaataaatgtatcatattgtcatttttct 26793387  T
Q  504 tatcatctgtg 514  Q
    ||||| |||||    
T  26793386 tatcacctgtg 26793376  T

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Target: chr5; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 428 - 514
Target Start/End: Complemental strand, 26818979 - 26818892
Alignment:
Q  428 aagtgattcaaatatgcaatttctagttaaagtcctctcatatact-aaaataaatgtatcatgttgtcatttttcttatcatctgtg 514  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||    
T  26818979 aagtgagtcaaatatgcaatttctagttaaagtcctctcatatactaaaaataaatgtatcatattgtcatttttcttatcacctgtg 26818892  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 19957054 - 19956981
Alignment:
Q  16 caagtttctctactaaagtctgaacag-ttgcagagagaaaagctcctccaatcatagctgcagccatcttcta 88  Q
    |||||||||| ||||| || |||| || |||| ||||||||||||||||| ||||||| |||| ||||||||||    
T  19957054 caagtttctcaactaaggtttgaataggttgctgagagaaaagctcctcctatcatagttgcaaccatcttcta 19956981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 322
Target Start/End: Complemental strand, 26793555 - 26793517
Alignment:
Q  283 aaagctggaaagcaaagctcagcagtggttaatattggac 322  Q
    |||||||||||||||||||||||||| |||||||||||||    
T  26793555 aaagctggaaagcaaagctcagcagt-gttaatattggac 26793517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 26906333 - 26906261
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttcta 88  Q
    |||||||||| ||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||    
T  26906333 caagtttctcaactaaagtctgaacaattgcagagagaaaagcttctcctatcatagctgcagccatcttcta 26906261  T

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Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 16 - 107
Target Start/End: Original strand, 44958311 - 44958402
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttctagggatattgttaaaacaaa 107  Q
    |||||||||| ||||| || |||||||||||||| |||||||||||||| ||||||| |||||||||||||||| | |||||||||| ||||    
T  44958311 caagtttctcaactaaggtttgaacagttgcagatagaaaagctcctcctatcatagttgcagccatcttctagtgttattgttaaagcaaa 44958402  T

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Target: scaffold0002 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 136521 - 136593
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttcta 88  Q
    |||||||||| ||||||||||||||||| |||||||||||||| ||||| | || || |||||||||||||||    
T  136521 caagtttctcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaagttgcagccatcttcta 136593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 146572 - 146644
Alignment:
Q  16 caagtttctctactaaagtctgaacagttgcagagagaaaagctcctccaatcatagctgcagccatcttcta 88  Q
    |||||||| | ||||||||||||||||| |||||||||||||| ||||| | || || |||||||||||||||    
T  146572 caagtttcgcaactaaagtctgaacagtagcagagagaaaagcccctcccaccaaagttgcagccatcttcta 146644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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