View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5970_low_9 (Length: 478)
Name: NF5970_low_9
Description: NF5970
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5970_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 61 - 459
Target Start/End: Original strand, 14811748 - 14812146
Alignment:
| Q |
61 |
taatttgtcatggcgtatcaactcacatctatgtcgagcaaaattagctcaatgctaccaacacaaccacggaaaaagctggtctcaacggaccacctac |
160 |
Q |
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| T |
14811748 |
taatttttcatggcgtatcagctcacatctatgtcgagcaaaattagctcaatgctaccaacacgaccatggaaaaagctgctctcaacggaccacctac |
14811847 |
T |
|
| Q |
161 |
gaaccaccctaaccttgatcttccagtccaccctaccagttgttagagagtgcaagtttatgaaaggcaacaccatttttctttagcacaatgttcttac |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14811848 |
aaaccaccctaaccttgatcttccagtccaccctaccagttgttagagagtgcaagtttgtgaaaggcaacaccatttttctttagcacaatgttcttac |
14811947 |
T |
|
| Q |
261 |
aaagttagttttaagttttttagagaataacagaaacactcgagcaaataccagaacatacaaatttcacaacgggaaagacattggaaaaaacatagag |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14811948 |
aaagttagttttaagttttttagagaataacagaaacactcgagcaaataccagaacatacaaatttcacaacgggaaagacattggaaaaaacatagag |
14812047 |
T |
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| Q |
361 |
ttaattaggnnnnnnnttagattaaagagatgggttaccttctagtagataggtaccacgctgtatatataggaaaagatggaaaagaaatgactcaat |
459 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812048 |
ttaattaggaaaaaaattagattaaagagatgggttatcttctagtagataggtaccacgctgtatatataggaaaagatggaaaagaaatgactcaat |
14812146 |
T |
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