View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971-Insertion-1 (Length: 1010)
Name: NF5971-Insertion-1
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971-Insertion-1 |
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| [»] scaffold0227 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 7 - 421
Target Start/End: Complemental strand, 29535168 - 29534754
Alignment:
| Q |
7 |
caccgcaaaaggaatgctaaagcatcacataagaaaagatgaaacagcgatttaccatcgaagtttccatcgacaattcgactagaatcattgtaattgt |
106 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29535168 |
caccgcaaaaggaatgctaaagcatcacataagaaaagatgaaacagcgatttaccatcgaagtttccatcgacaattcgactagaatcattgtaattgt |
29535069 |
T |
|
| Q |
107 |
ccattgaaatgactgcaatatcgggcatggagttgaatatcttttcagcaaacacagtctttccagccccagaaggaccccctacccctattaatatcat |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29535068 |
ccattgaaatgactgcaatatcgggcatggagttgaatatcttttcggcaaacacagtctttccagccccagaaggaccccctacccctattaatatcat |
29534969 |
T |
|
| Q |
207 |
tccatcatttttctggaccaacaattggaatgcatggaacactatagagaaaccattctcaaatgatagtttgttctggattggagaaacctcatagcgt |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29534968 |
tccatcatttttctggaccaacaattggaatgcatggaacactatagagaaaccattctcaaatgatagtttgttctggattggagaaacctcatagcgt |
29534869 |
T |
|
| Q |
307 |
tcgcagtctttccttttaaccaatcgaacttgatcttttaagcgaccgagatgtttttgttgtgaatcaactccaatggtatcctgtgccattgaaggaa |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29534868 |
tcgcagtctttccttttaaccaatcgaacttgatcttttaagcgaccgagatgtttttgttgtgaatcaactccaatggtatcctgtgccattgaaggaa |
29534769 |
T |
|
| Q |
407 |
tgctgatttccttct |
421 |
Q |
| |
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||||||||||||||| |
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| T |
29534768 |
tgctgatttccttct |
29534754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 479 - 982
Target Start/End: Complemental strand, 29534696 - 29534173
Alignment:
| Q |
479 |
gatatcatctatattgcaatttttgcatgctgtaatcattttgtcacatgaggtgtcagcttagtgataagagcttcgctttgtaacttctgactgagtt |
578 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29534696 |
gatatcatctatattgtaatttttgcatgctgtaatcattttgtcacatgaagtgtcagcttagtgataagagcttcgctttgtaacttctgactgggtt |
29534597 |
T |
|
| Q |
579 |
caaatttcattggagacagttgtatcaatacactaagtgagacgaaataagcagcatttcgattcaaagagaaacgttacaatttnnnnnnntagaaggg |
678 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
29534596 |
caaatttcattggagacagttgtatcaatacactaagtgagacgaaataagcagcatttcgattcaaagagaaacgttacaatttaaaaaaagaaaaggg |
29534497 |
T |
|
| Q |
679 |
aaaaactctaaaatgaaaccatgtccaaatggattttacacagtcacgacatttggggccgttcgatcttgattggacaccctagaaaaaacaaatttaa |
778 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
29534496 |
aaaaactctaaaatgaaaccatgtccaaatggattttacactgtcacgacatttggggcc-ttcgatcttgattggacaccctagaaaaaacaaatttaa |
29534398 |
T |
|
| Q |
779 |
tttttatttagtagttctaaaaaatgttgtacttaaatcagcaccgtccgatcttgattggacagtcaccaatgcctgactgtggggggttttgactgca |
878 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
29534397 |
tttttatttagtagttctaaaaaatgttgtacttaaatcagcaccgtccgatcttgattggacagtcaccaatgcctgaccgtgggggattttgactgca |
29534298 |
T |
|
| Q |
879 |
gctaaa--cccggtccc-------------aaaatc-aaagcctactcttc-aaattct-aattgtggtcttcaattgcaattggga-cgc-agataaag |
958 |
Q |
| |
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|||||| ||||||||| |||||| |||||||||||||| ||||||| ||||| ||||||||||||||||||||| ||| |||||||| |
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| T |
29534297 |
gctaaacccccggtcccaaatgaagtcccaaaaatcaaaagcctactcttcaaaattctaaattgcggtcttcaattgcaattgggaccgcaagataaag |
29534198 |
T |
|
| Q |
959 |
a-tttagaattaagggtctctacaa |
982 |
Q |
| |
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| ||||||||| ||||||||||||| |
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| T |
29534197 |
attttagaatttagggtctctacaa |
29534173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 56 - 347
Target Start/End: Complemental strand, 28072071 - 28071780
Alignment:
| Q |
56 |
atttaccatcgaagtttccatcgacaattcgactagaatcattgtaattgtccattgaaatgactgcaatatcgggcatggagttgaatatcttttcagc |
155 |
Q |
| |
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|||||||||| ||||| ||||| ||||||||||||| ||| |||||||| |||||||||||||| ||||| ||||||| |||||| ||||||||| | |
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| T |
28072071 |
atttaccatcaaagttgccatcaacaattcgactagcatcgttgtaattatccattgaaatgacagcaatgctgggcatgaagttgagtatcttttcggt |
28071972 |
T |
|
| Q |
156 |
aaacacagtctttccagccccagaaggaccccctacccctattaatatcattccatcatttttctggaccaacaattggaatgcatggaacactatagag |
255 |
Q |
| |
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||| | |||||| ||||| || ||||||||| | ||||| | ||||| ||||||||||| || ||| | |||| |||| | ||| | | ||| || | |
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| T |
28071971 |
aaatatagtcttcccagctcctgaaggacccgccaccccaaccaatattattccatcattcttttgggctaacagttggcacgcacgaatcacaatgaaa |
28071872 |
T |
|
| Q |
256 |
aaaccattctcaaatgatagtttgttctggattggagaaacctcatagcgttcgcagtctttccttttaaccaatcgaacttgatcttttaa |
347 |
Q |
| |
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|| || |||||||||||||||| | || |||| ||||| | ||||||| | ||||||||||||||||||| |||||||||||||||| |
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| T |
28071871 |
aaccccttctcaaatgatagttgatcttgtattgaagaaatcacatagcgattagagtctttccttttaaccaaatgaacttgatcttttaa |
28071780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0227 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 55 - 347
Target Start/End: Original strand, 20980 - 21271
Alignment:
| Q |
55 |
gatttaccatcgaagtttccatcgacaattcgactagaatcattgtaattgtccattgaaatgactgcaatatcgggcatggagttgaatatcttttcag |
154 |
Q |
| |
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||||||||||| ||||| ||||| ||||||||||||| ||| |||||||| |||||||||||||| ||||| |||||| |||||| ||||||||| | |
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| T |
20980 |
gatttaccatcaaagttgccatcaacaattcgactagcatccttgtaattatccattgaaatgacagcaatgctaggcatgaagttgagtatcttttcgg |
21079 |
T |
|
| Q |
155 |
caaacacagtctttccagccccagaaggaccccctacccctattaatatcattccatcatttttctggaccaacaattggaatgcatggaacactataga |
254 |
Q |
| |
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||| | |||||||||||| || ||||||||| | ||||| | ||||| ||||||||||| || ||| | ||||||||| ||||| | | ||| || | |
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| T |
21080 |
taaatatagtctttccagctcccgaaggacccgccaccccaaccaatattattccatcattattttgggctaacaattggcatgcacgaatcacaatgaa |
21179 |
T |
|
| Q |
255 |
gaaaccattctcaaatgatagtttgttctggattggagaaacctcatagcgttcgcagtctttccttttaaccaatcgaacttgatcttttaa |
347 |
Q |
| |
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|| || ||||| |||||||||| | || |||| ||||| | ||||||| | ||| ||||||||||||||| |||||||||||||||| |
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| T |
21180 |
aaaccccttctcgaatgatagttgatcttgtattgaagaaatcccatagcgattagagt-tttccttttaaccaaatgaacttgatcttttaa |
21271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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