View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5971-Insertion-10 (Length: 338)
Name: NF5971-Insertion-10
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971-Insertion-10 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 9 - 338
Target Start/End: Original strand, 39716614 - 39716943
Alignment:
| Q |
9 |
acagcttccacttaaaggaataattcagacagtaattaccaattacataaaactaacaagcattcaaaagccaaaatagttaaaattgaaatagttcaaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39716614 |
acagcttccacttaaaggaataattcagacagtaattaccaattacataaaactaacaagcattcaaaagccaaaatagttaaaattgaaatagttcaaa |
39716713 |
T |
|
| Q |
109 |
tgtctcatttggtcacagtgataaatgttatagtcccctaatccactccatctgctatctccttccaatcaaaaagcgacctacagtggattgaaacaac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39716714 |
tgtctcatttggtcacagtgataaatgttatagtcccctaatccactccatctgctatctccttccaatcaaaaagcgacctacagtggattgaaacaac |
39716813 |
T |
|
| Q |
209 |
ggtgaatgagtaatttatgtgcctaaaacaaagccaaacatgatgttaagttcaaacagtaacaacaaaatagcagcagcagaaaatgccctcccaccca |
308 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39716814 |
ggtgaatgagtaatttatgtgccaaaaacaaagccaaacatgatgttaagttcaaacagtaacaacaaaatagcagcagcagaaaatgccctcccaccca |
39716913 |
T |
|
| Q |
309 |
aaaattacatcaacatccattaattaatta |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39716914 |
aaaattacatcaacatccattaattaatta |
39716943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University