View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5971-Insertion-11 (Length: 290)
Name: NF5971-Insertion-11
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971-Insertion-11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 8060540 - 8060790
Alignment:
| Q |
7 |
caacttacacttagactttttgtttgagtttgaggaaaagggacaattttaagcaggaagaaggacaagggacgataatcttttatccatttggaggatt |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
8060540 |
caacttacacttagactttttgtttgagtttgaggaaaagggacaattttaagcaggaagaaggaaaagggacgataatcttttatccatttggaggatt |
8060639 |
T |
|
| Q |
107 |
tttgagagaaaacttaagaccaatatttgcaagatgnnnnnnnttgaagaatatttcaaaatcttctaaaacaatccaaactctcaattcatattttgag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8060640 |
tttgagagaaaacttaagaccaatatttgcaagatgaaaagaattgaagaatatttgaaaatcttctaaaacaatccaaactctcaattcatattttgag |
8060739 |
T |
|
| Q |
207 |
tttttcaaattgtgagttttagataagaaaaagtgcggaggaagatctacac |
258 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8060740 |
tttttcaaattgtgagttttagataag-aaaagtgcggaggaagatctacac |
8060790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University