View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5971-Insertion-13 (Length: 275)
Name: NF5971-Insertion-13
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971-Insertion-13 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 8647614 - 8647862
Alignment:
| Q |
9 |
tttccaactatgaaagccctggagaagatcaagcttctattttggaccgctagtcatgattcactccccactaatgcgcttttgcaccatcgcggtatag |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8647614 |
tttccaactatgaaagccctggagaagatcaagcttctattttggaccgctagtcatgattcactccccactaatgcgcttttgcaccatcgcggtatag |
8647713 |
T |
|
| Q |
109 |
ttttgtctcctatgtgttatagatgtaatgatcatgtggaagatgtttactttacactacctcagggattgcctctttatgcttgtatttggagatcctt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
8647714 |
ttttgtctcctatgtgttatagatgtaatgatcatgtggaagatgtttactttacactacctcagggattgcctctttctgcttgtatttggagatcctt |
8647813 |
T |
|
| Q |
209 |
ggggtacaatggtattgcgttcttccaggagttgaacattcactcatgg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8647814 |
ggggtacaatggtattgcgttcttccaggagttgaacattcactcatgg |
8647862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 18 - 275
Target Start/End: Original strand, 19721920 - 19722175
Alignment:
| Q |
18 |
atgaaagccctggagaagatcaagcttctattttggaccgctagtcatgattcactccccactaatgcgcttttgcaccatcgcggtatagttttgtctc |
117 |
Q |
| |
|
|||||||||| |||||||||||| | || |||||||||||||| |||| ||||||||||||||| ||||||||||||| ||||||||| |||||||||| |
|
|
| T |
19721920 |
atgaaagccccagagaagatcaagttccttttttggaccgctagccatgtttcactccccactaaagcgcttttgcaccgtcgcggtatggttttgtctc |
19722019 |
T |
|
| Q |
118 |
ctatgtgttatagatgtaatgatcatgtggaagatgtttactttacactacctcagggattg-cctctttatgcttgtatttggagatccttggggtaca |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| | |||| ||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19722020 |
ctatgtgttatagatgtaatgatcatgtggaagatgt----tttacagtgcctccgggattgccctctttctgcttgtatttggagatccttggggtaca |
19722115 |
T |
|
| Q |
217 |
atggtattgcgttcttccaggagttgaacattcactcatggctca-aaaaagtctccgcc |
275 |
Q |
| |
|
| | |||| | |||||||||||||| |||| |||||| ||||||| |||| ||||||||| |
|
|
| T |
19722116 |
acgatatttctttcttccaggagttaaacactcactcgtggctcagaaaaggtctccgcc |
19722175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 180 - 264
Target Start/End: Complemental strand, 4491308 - 4491224
Alignment:
| Q |
180 |
cctctttatgcttgtatttggagatccttggggtacaatggtattgcgttcttccaggagttgaacattcactcatggctcaaaa |
264 |
Q |
| |
|
|||||||||| |||||| || ||||||||||||||||||| ||||| ||| ||| |||| || |||| |||||| |||||||||| |
|
|
| T |
4491308 |
cctctttatgattgtatgtgaagatccttggggtacaatgctattgtgttattctaggatttaaacactcactcgtggctcaaaa |
4491224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 29 - 266
Target Start/End: Original strand, 29312451 - 29312684
Alignment:
| Q |
29 |
ggagaagatcaagcttctattttggaccgctagtcatgattcactccccactaatgcgcttttgcaccatcgcggtatagttttgtctcctatgtgttat |
128 |
Q |
| |
|
||||||||||||| | | ||||||||| ||||||||||||| ||||||||||| | ||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
29312451 |
ggagaagatcaagttgttcttttggaccactagtcatgattcgctccccactaaagtgcttttgcaccgtcgcggtatggttttgtctcctatgtgttat |
29312550 |
T |
|
| Q |
129 |
agatgtaatgatcatgtggaagatgtttactttacactacctcaggga-ttgcctctttatgcttgtatttggagatccttggggtacaatggtattgcg |
227 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||| ||||||||| || ||||||| ||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
29312551 |
agatgtaatgatcatgtggaagatgt----tttagactgcctcagggatttccctctttctgcttgtatttggagatcctt-gggaacaatggtattgcg |
29312645 |
T |
|
| Q |
228 |
ttcttccaggagttgaacattcactcatggctcaaaaaa |
266 |
Q |
| |
|
|||||||| ||||| |||| |||||| |||||||||||| |
|
|
| T |
29312646 |
ttcttccatgagttaaacactcactcgtggctcaaaaaa |
29312684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 31 - 261
Target Start/End: Complemental strand, 12288726 - 12288498
Alignment:
| Q |
31 |
agaagatcaagcttctattttggaccgctagtcatgattcactcccc-actaatgcgcttttgcaccatcgcggtatagttttgtctcctatgtgttata |
129 |
Q |
| |
|
||||||||||| | || |||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||| |||| |||| |
|
|
| T |
12288726 |
agaagatcaagttgcttttttggaccgttagtcatgattcactcccccactaaagcgcttttgcaccatcgcggtatggttttgtctcctgtgtgctata |
12288627 |
T |
|
| Q |
130 |
gatgtaatgatcatgtggaagatgtttactttacactacctcagggattg-cctctttatgcttgtatttggagatccttggggtacaatggtattgcgt |
228 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| |||| ||||||| ||| ||| |||||||||||||||||| |||||||| |||| |||| | | |
|
|
| T |
12288626 |
gatgtaatgatcatgtggaagatgt----tttacactgcctccgggattgccctatttctgcttgtatttggagatcattggggtaaaatgatatttctt |
12288531 |
T |
|
| Q |
229 |
tcttccaggagttgaacattcactcatggctca |
261 |
Q |
| |
|
||||||||||||| |||| |||||| ||||||| |
|
|
| T |
12288530 |
tcttccaggagttaaacactcactcgtggctca |
12288498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 72 - 267
Target Start/End: Complemental strand, 3632618 - 3632427
Alignment:
| Q |
72 |
ctccccactaatgcgcttttgcaccatcgcggtatagttttgtctcctatgtgttatagatgtaatgatcatgtggaagatgtttactttacactacctc |
171 |
Q |
| |
|
||||||||||| || |||| |||||||||| ||| | ||||| |||| |||| ||||||||||||||||||| ||| |||||| | |||| || |
|
|
| T |
3632618 |
ctccccactaaagcatttttacaccatcgcgatatggctttgtatcctttgtgccatagatgtaatgatcatgttgaaaatgttt----tgcactgtctt |
3632523 |
T |
|
| Q |
172 |
agggattgcc-tctttatgcttgtatttggagatccttggggtacaatggtattgcgttcttccaggagttgaacattcactcatggctcaaaaaag |
267 |
Q |
| |
|
|||||||| | ||| | |||||||||||||||||| |||||||||||| | | ||| |||||||||||||| ||| |||||| ||||||||||||| |
|
|
| T |
3632522 |
agggattgtcatctctctgcttgtatttggagatctttggggtacaatagcactgc-ttcttccaggagttacacactcactcgtggctcaaaaaag |
3632427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 2976740 - 2976785
Alignment:
| Q |
222 |
attgcgttcttccaggagttgaacattcactcatggctcaaaaaag |
267 |
Q |
| |
|
|||||||||||||||||| | |||| |||||| ||||||||||||| |
|
|
| T |
2976740 |
attgcgttcttccaggagctaaacactcactcgtggctcaaaaaag |
2976785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 218
Target Start/End: Complemental strand, 4870802 - 4870713
Alignment:
| Q |
126 |
tatagatgtaatgatcatgtggaagatgtttactttacactacctcagggattgcc-tctttatgcttgtatttggagatccttggggtacaat |
218 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| |||||| |||| ||||| || ||| | ||| ||||| ||||||||||||||||||||| |
|
|
| T |
4870802 |
tatagatgtaatgaccatgttgaagatgttt----tacactgcctcgaggatttccctctctctgcatgtatgtggagatccttggggtacaat |
4870713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 37035912 - 37035989
Alignment:
| Q |
187 |
atgcttgtatttggagatccttggggtacaatggtattgcgttcttccaggagttgaacattcactcatggctcaaaa |
264 |
Q |
| |
|
|||| ||||| |||||||||||| |||||||| ||| ||| |||||||| ||||| ||| ||||| ||||||||||| |
|
|
| T |
37035912 |
atgcatgtatgtggagatccttgtggtacaatagtactgctttcttccatgagttacacactcacttatggctcaaaa |
37035989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University