View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5971-Insertion-17 (Length: 58)

Name: NF5971-Insertion-17
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5971-Insertion-17
NF5971-Insertion-17
[»] scaffold0009 (1 HSPs)
scaffold0009 (8-58)||(1506-1556)
[»] chr8 (11 HSPs)
chr8 (8-58)||(16290872-16290922)
chr8 (8-58)||(26657683-26657733)
chr8 (14-58)||(19742058-19742102)
chr8 (8-58)||(18036828-18036878)
chr8 (8-58)||(24184763-24184813)
chr8 (8-49)||(24317424-24317465)
chr8 (14-58)||(29840877-29840921)
chr8 (10-57)||(44364-44411)
chr8 (14-49)||(1046589-1046624)
chr8 (14-41)||(21499360-21499387)
chr8 (19-58)||(26867474-26867513)
[»] chr6 (15 HSPs)
chr6 (8-58)||(24617745-24617795)
chr6 (8-52)||(13575023-13575067)
chr6 (8-52)||(13577562-13577606)
chr6 (8-52)||(15141916-15141960)
chr6 (8-58)||(14641452-14641502)
chr6 (8-52)||(8483644-8483688)
chr6 (8-52)||(20898984-20899028)
chr6 (8-41)||(22705348-22705381)
chr6 (14-58)||(9351142-9351186)
chr6 (14-41)||(15828242-15828269)
chr6 (9-40)||(31633595-31633626)
chr6 (19-57)||(7242898-7242936)
chr6 (8-42)||(13565945-13565979)
chr6 (8-50)||(14372198-14372240)
chr6 (8-58)||(34338106-34338156)
[»] chr5 (6 HSPs)
chr5 (8-58)||(2259409-2259459)
chr5 (8-58)||(15614753-15614803)
chr5 (8-58)||(21711550-21711600)
chr5 (8-41)||(4120552-4120585)
chr5 (8-52)||(24765513-24765557)
chr5 (19-58)||(28637634-28637673)
[»] chr1 (8 HSPs)
chr1 (8-58)||(19054397-19054447)
chr1 (8-58)||(34528931-34528981)
chr1 (15-49)||(3833445-3833479)
chr1 (8-58)||(10423813-10423863)
chr1 (8-37)||(10032100-10032129)
chr1 (13-52)||(12629266-12629305)
chr1 (8-39)||(16816246-16816277)
chr1 (8-46)||(18332713-18332751)
[»] chr2 (9 HSPs)
chr2 (9-58)||(40926474-40926523)
chr2 (9-58)||(17151311-17151360)
chr2 (12-58)||(24270833-24270879)
chr2 (12-58)||(24297357-24297403)
chr2 (14-52)||(28948893-28948931)
chr2 (8-40)||(6083769-6083801)
chr2 (17-49)||(24933718-24933750)
chr2 (15-41)||(32234445-32234471)
chr2 (8-58)||(36802277-36802327)
[»] chr4 (8 HSPs)
chr4 (8-52)||(34657925-34657969)
chr4 (10-57)||(11415989-11416036)
chr4 (9-51)||(25219676-25219718)
chr4 (8-52)||(4936047-4936091)
chr4 (14-58)||(33040592-33040636)
chr4 (14-49)||(16913388-16913423)
chr4 (8-46)||(37005913-37005951)
chr4 (19-49)||(44453103-44453133)
[»] scaffold0437 (1 HSPs)
scaffold0437 (8-58)||(11430-11480)
[»] scaffold0068 (1 HSPs)
scaffold0068 (8-58)||(2310-2360)
[»] chr7 (7 HSPs)
chr7 (8-58)||(12163411-12163461)
chr7 (8-58)||(1537970-1538020)
chr7 (9-40)||(3997173-3997204)
chr7 (14-49)||(11842780-11842815)
chr7 (19-58)||(37375025-37375064)
chr7 (15-41)||(4407428-4407454)
chr7 (15-41)||(15468274-15468300)
[»] chr3 (6 HSPs)
chr3 (8-58)||(1051329-1051379)
chr3 (8-58)||(10623247-10623297)
chr3 (8-40)||(26953963-26953995)
chr3 (8-58)||(25760036-25760086)
chr3 (12-52)||(10997449-10997489)
chr3 (11-41)||(27943628-27943658)
[»] scaffold0356 (1 HSPs)
scaffold0356 (18-51)||(13748-13781)
[»] scaffold0196 (1 HSPs)
scaffold0196 (8-41)||(797-830)
[»] scaffold0911 (1 HSPs)
scaffold0911 (10-58)||(2233-2281)
[»] scaffold0166 (1 HSPs)
scaffold0166 (8-52)||(8010-8054)
[»] scaffold0123 (1 HSPs)
scaffold0123 (12-40)||(29985-30013)
[»] scaffold0012 (2 HSPs)
scaffold0012 (9-41)||(52742-52774)
scaffold0012 (8-50)||(103730-103772)
[»] scaffold0195 (2 HSPs)
scaffold0195 (9-40)||(9000-9031)
scaffold0195 (9-40)||(14389-14420)
[»] scaffold0114 (1 HSPs)
scaffold0114 (8-58)||(2988-3038)


Alignment Details
Target: scaffold0009 (Bit Score: 39; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 1506 - 1556
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| |||||||||||||||||||||||||||| |||||||||| |||||    
T  1506 agaggcaacaccgacatcccaactaggttggcaccccgggaaacctccatc 1556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.00000000000006; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 16290922 - 16290872
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| |||||||||||||||||||||||||||| |||||||||| |||||    
T  16290922 agaggcaacaccgacatcccaactaggttggcaccccgggaaacctccatc 16290872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 26657733 - 26657683
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||||||||||||||||||||||| ||||||||  ||||||||| |||||    
T  26657733 agaggaaacaccgacatcccaactaagttggcacttcgggaaacctccatc 26657683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 19742102 - 19742058
Alignment:
Q  14 aacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    |||||||||||||||||||||||||||| ||||||| || |||||    
T  19742102 aacaccgacatcccaactaggttggcaccccgggaagcctccatc 19742058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 18036828 - 18036878
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||||||||||||||||||||||| |||||||| ||| | |||| |||||    
T  18036828 agaggaaacaccgacatcccaactatgttggcaccccgaggaacctccatc 18036878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 24184763 - 24184813
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| |||||||||||||||||||||||||||  ||||||| || |||||    
T  24184763 agagggaacaccgacatcccaactaggttggcatcccgggaaccctccatc 24184813  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 24317465 - 24317424
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaa 49  Q
    |||||||||||| |||| |||||||||||||||| |||||||    
T  24317465 agaggaaacaccaacataccaactaggttggcaccccgggaa 24317424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 29840921 - 29840877
Alignment:
Q  14 aacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    |||| ||||||||||||||||||||||| ||| |||||| |||||    
T  29840921 aacatcgacatcccaactaggttggcaccccgagaaacctccatc 29840877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 44411 - 44364
Alignment:
Q  10 aggaaacaccgacatcccaactaggttggcacaccgggaaacccccat 57  Q
    |||||||||||| ||||||| |||||||| || |||||||||| ||||    
T  44411 aggaaacaccgaaatcccaattaggttggtaccccgggaaacctccat 44364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 1046624 - 1046589
Alignment:
Q  14 aacaccgacatcccaactaggttggcacaccgggaa 49  Q
    ||||||||||||||||||| |||||||| |||||||    
T  1046624 aacaccgacatcccaactatgttggcactccgggaa 1046589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 41
Target Start/End: Original strand, 21499360 - 21499387
Alignment:
Q  14 aacaccgacatcccaactaggttggcac 41  Q
    ||||||||||||||||||||||||||||    
T  21499360 aacaccgacatcccaactaggttggcac 21499387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 26867513 - 26867474
Alignment:
Q  19 cgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    |||||||||||||||||||||||  ||||||||| |||||    
T  26867513 cgacatcccaactaggttggcacctcgggaaacctccatc 26867474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.00000000000006; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 24617745 - 24617795
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    |||||||||||||||||||||||||||||||||| |||| ||||| |||||    
T  24617745 agaggaaacaccgacatcccaactaggttggcaccccggaaaacctccatc 24617795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 13575067 - 13575023
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacc 52  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||    
T  13575067 agagggaacaccgacatcccaactaggttggcactccgggaaacc 13575023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 13577606 - 13577562
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacc 52  Q
    ||||| |||||||||||||||||||||||||||| ||||||||||    
T  13577606 agagggaacaccgacatcccaactaggttggcactccgggaaacc 13577562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 15141916 - 15141960
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacc 52  Q
    |||||||||||||||||||||||||||||||||  ||||||||||    
T  15141916 agaggaaacaccgacatcccaactaggttggcaacccgggaaacc 15141960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 14641502 - 14641452
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| |||||||||||||||||||||||||||| ||||||| || |||||    
T  14641502 agagggaacaccgacatcccaactaggttggcaccccgggaaccctccatc 14641452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 8483644 - 8483688
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacc 52  Q
    ||||||||||| |||||||||||||||||||||| ||||| ||||    
T  8483644 agaggaaacacggacatcccaactaggttggcaccccggggaacc 8483688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 20899028 - 20898984
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacc 52  Q
    ||||| |||||||||||||||||||||||||||| || |||||||    
T  20899028 agaggcaacaccgacatcccaactaggttggcaccccaggaaacc 20898984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 22705381 - 22705348
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcac 41  Q
    ||||| ||||||||||||||||||||||||||||    
T  22705381 agaggtaacaccgacatcccaactaggttggcac 22705348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 9351142 - 9351186
Alignment:
Q  14 aacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    |||| ||||||||||||||||||||||| ||| |||||| |||||    
T  9351142 aacatcgacatcccaactaggttggcaccccgagaaacctccatc 9351186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 41
Target Start/End: Complemental strand, 15828269 - 15828242
Alignment:
Q  14 aacaccgacatcccaactaggttggcac 41  Q
    ||||||||||||||||||||||||||||    
T  15828269 aacaccgacatcccaactaggttggcac 15828242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 31633595 - 31633626
Alignment:
Q  9 gaggaaacaccgacatcccaactaggttggca 40  Q
    ||||||||||||||||||||||||| ||||||    
T  31633595 gaggaaacaccgacatcccaactagattggca 31633626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 7242898 - 7242936
Alignment:
Q  19 cgacatcccaactaggttggcacaccgggaaacccccat 57  Q
    ||||||||||||||||||||||| ||| | |||||||||    
T  7242898 cgacatcccaactaggttggcaccccgaggaacccccat 7242936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 42
Target Start/End: Complemental strand, 13565979 - 13565945
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcaca 42  Q
    ||||| |||| ||||||||||||||||||||||||    
T  13565979 agagggaacaacgacatcccaactaggttggcaca 13565945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 14372198 - 14372240
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaa 50  Q
    ||||| |||| ||||||||||||||||||||||| ||| ||||    
T  14372198 agaggcaacatcgacatcccaactaggttggcactccgagaaa 14372240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 34338106 - 34338156
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||||| || ||||||||||||||||||||||| ||| || ||| |||||    
T  34338106 agaggaatcatcgacatcccaactaggttggcaccccgagagacctccatc 34338156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.00000000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 2259409 - 2259459
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    |||||||||||||||||||||||||||||||||  |||||||||| |||||    
T  2259409 agaggaaacaccgacatcccaactaggttggcatcccgggaaacctccatc 2259459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 15614803 - 15614753
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| |||||||||||||||||||||||||||| ||||||| || |||||    
T  15614803 agagggaacaccgacatcccaactaggttggcaccccgggaaccctccatc 15614753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 21711550 - 21711600
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| |||||||||||||||||||||||||||| ||||||| || |||||    
T  21711550 agagggaacaccgacatcccaactaggttggcaccccgggaaccctccatc 21711600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 4120585 - 4120552
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcac 41  Q
    ||||| ||||||||||||||||||||||||||||    
T  4120585 agagggaacaccgacatcccaactaggttggcac 4120552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 24765513 - 24765557
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacc 52  Q
    |||||||| ||||||||||||||||| ||||||  ||||||||||    
T  24765513 agaggaaataccgacatcccaactagattggcatcccgggaaacc 24765557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 28637673 - 28637634
Alignment:
Q  19 cgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||||||||||||||||||||| ||| | ||||||||||    
T  28637673 cgacatcccaactaggttggcaccccgaggaacccccatc 28637634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.00000000000006; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 19054397 - 19054447
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    |||||||||||||||||||||||||||||||||| ||||| |||| |||||    
T  19054397 agaggaaacaccgacatcccaactaggttggcaccccggggaacctccatc 19054447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 34528931 - 34528981
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    |||||||||| ||||||||||||||||||||||| |||||||||| |||||    
T  34528931 agaggaaacagcgacatcccaactaggttggcaccccgggaaacctccatc 34528981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 15 - 49
Target Start/End: Original strand, 3833445 - 3833479
Alignment:
Q  15 acaccgacatcccaactaggttggcacaccgggaa 49  Q
    ||||||||||||||||||||||||||| |||||||    
T  3833445 acaccgacatcccaactaggttggcaccccgggaa 3833479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 10423813 - 10423863
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| |||| ||||||||||||||||||||||| ||| |||||| |||||    
T  10423813 agaggcaacatcgacatcccaactaggttggcaccccgagaaacctccatc 10423863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 37
Target Start/End: Original strand, 10032100 - 10032129
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttg 37  Q
    ||||||||||||||||||||||||||||||    
T  10032100 agaggaaacaccgacatcccaactaggttg 10032129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 12629266 - 12629305
Alignment:
Q  13 aaacaccgacatcccaactaggttggcacaccgggaaacc 52  Q
    ||||||||||||||||||||| ||||||  ||||||||||    
T  12629266 aaacaccgacatcccaactagattggcatcccgggaaacc 12629305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 39
Target Start/End: Original strand, 16816246 - 16816277
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggc 39  Q
    |||||||||||| |||||||||||||||||||    
T  16816246 agaggaaacaccaacatcccaactaggttggc 16816277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 18332713 - 18332751
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgg 46  Q
    |||| ||||| ||||||||||||||||||||||| ||||    
T  18332713 agagaaaacatcgacatcccaactaggttggcaccccgg 18332751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.0000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 40926474 - 40926523
Alignment:
Q  9 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||||||| ||||||||||||||||||||||| |||||||||| |||||    
T  40926474 gaggaaacatcgacatcccaactaggttggcaccccgggaaacctccatc 40926523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.00000000006
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 17151360 - 17151311
Alignment:
Q  9 gaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    |||||||||| ||||| |||||||||||||||| |||||||||| |||||    
T  17151360 gaggaaacactgacatgccaactaggttggcactccgggaaacctccatc 17151311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 24270833 - 24270879
Alignment:
Q  12 gaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||||| ||||||||||||||||||||||  ||||||||| |||||    
T  24270833 gaaacactgacatcccaactaggttggcactgcgggaaacctccatc 24270879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 24297403 - 24297357
Alignment:
Q  12 gaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||||| ||||||||||||||||||||||  ||||||||| |||||    
T  24297403 gaaacactgacatcccaactaggttggcactgcgggaaacctccatc 24297357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 14 - 52
Target Start/End: Complemental strand, 28948931 - 28948893
Alignment:
Q  14 aacaccgacatcccaactaggttggcacaccgggaaacc 52  Q
    ||||||||||||||||||| |||||||| ||||||||||    
T  28948931 aacaccgacatcccaactatgttggcaccccgggaaacc 28948893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 40
Target Start/End: Complemental strand, 6083801 - 6083769
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggca 40  Q
    |||||||||||||||||||| ||||||||||||    
T  6083801 agaggaaacaccgacatcccgactaggttggca 6083769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 24933718 - 24933750
Alignment:
Q  17 accgacatcccaactaggttggcacaccgggaa 49  Q
    ||||||||||||||||||||||||| |||||||    
T  24933718 accgacatcccaactaggttggcactccgggaa 24933750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 41
Target Start/End: Original strand, 32234445 - 32234471
Alignment:
Q  15 acaccgacatcccaactaggttggcac 41  Q
    |||||||||||||||||||||||||||    
T  32234445 acaccgacatcccaactaggttggcac 32234471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 36802277 - 36802327
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| |||| ||||||| ||||||||||||||| ||| |||||| |||||    
T  36802277 agaggcaacatcgacatctcaactaggttggcaccccgagaaacctccatc 36802327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 34657925 - 34657969
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacc 52  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||    
T  34657925 agaggaaacaccgacatcccaactaggttggcaccccggggaacc 34657969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 11415989 - 11416036
Alignment:
Q  10 aggaaacaccgacatcccaactaggttggcacaccgggaaacccccat 57  Q
    ||||||||||||||||||||||| |||||||| | || ||||||||||    
T  11415989 aggaaacaccgacatcccaactaagttggcaccctggaaaacccccat 11416036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 51
Target Start/End: Complemental strand, 25219718 - 25219676
Alignment:
Q  9 gaggaaacaccgacatcccaactaggttggcacaccgggaaac 51  Q
    |||||||||||||||| ||||||||||||||||  ||||||||    
T  25219718 gaggaaacaccgacattccaactaggttggcacctcgggaaac 25219676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 4936091 - 4936047
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacc 52  Q
    |||||||||| |||||||||||||| |||||||| ||| ||||||    
T  4936091 agaggaaacatcgacatcccaactaagttggcaccccgcgaaacc 4936047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 14 - 58
Target Start/End: Original strand, 33040592 - 33040636
Alignment:
Q  14 aacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    |||| ||||||||||||||||||||||| ||| |||||| |||||    
T  33040592 aacatcgacatcccaactaggttggcaccccgagaaacctccatc 33040636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 49
Target Start/End: Original strand, 16913388 - 16913423
Alignment:
Q  14 aacaccgacatcccaactaggttggcacaccgggaa 49  Q
    |||||||||||||||||| ||||||||| |||||||    
T  16913388 aacaccgacatcccaactgggttggcactccgggaa 16913423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 46
Target Start/End: Original strand, 37005913 - 37005951
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgg 46  Q
    ||||||| |||||||||||||| ||||||||||| ||||    
T  37005913 agaggaagcaccgacatcccaattaggttggcaccccgg 37005951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 44453103 - 44453133
Alignment:
Q  19 cgacatcccaactaggttggcacaccgggaa 49  Q
    ||||||||||||||||||||||| |||||||    
T  44453103 cgacatcccaactaggttggcaccccgggaa 44453133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 11480 - 11430
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| |||||||||||||||||||||||||||| ||||||| || |||||    
T  11480 agagggaacaccgacatcccaactaggttggcaccccgggaaccctccatc 11430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 35; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 2360 - 2310
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| |||||||||||||||||||||||||||| ||||||| || |||||    
T  2360 agagggaacaccgacatcccaactaggttggcaccccgggaaccctccatc 2310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 12163461 - 12163411
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||| |||||    
T  12163461 agaggcaacaccgacatcccaactaggttggcacctcgggaaacctccatc 12163411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 1537970 - 1538020
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    |||||||||||||||||||||||||||||| |||   |||||||| |||||    
T  1537970 agaggaaacaccgacatcccaactaggttgccacctagggaaacctccatc 1538020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 3997173 - 3997204
Alignment:
Q  9 gaggaaacaccgacatcccaactaggttggca 40  Q
    |||| |||||||||||||||||||||||||||    
T  3997173 gaggcaacaccgacatcccaactaggttggca 3997204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 49
Target Start/End: Complemental strand, 11842815 - 11842780
Alignment:
Q  14 aacaccgacatcccaactaggttggcacaccgggaa 49  Q
    ||||||||||||||||||||||||| || |||||||    
T  11842815 aacaccgacatcccaactaggttggtaccccgggaa 11842780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 37375064 - 37375025
Alignment:
Q  19 cgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||||||||||||||||||||| ||| | ||||||||||    
T  37375064 cgacatcccaactaggttggcaccccgaggaacccccatc 37375025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 41
Target Start/End: Original strand, 4407428 - 4407454
Alignment:
Q  15 acaccgacatcccaactaggttggcac 41  Q
    |||||||||||||||||||||||||||    
T  4407428 acaccgacatcccaactaggttggcac 4407454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 15 - 41
Target Start/End: Original strand, 15468274 - 15468300
Alignment:
Q  15 acaccgacatcccaactaggttggcac 41  Q
    |||||||||||||||||||||||||||    
T  15468274 acaccgacatcccaactaggttggcac 15468300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 1051329 - 1051379
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| ||||||||||||||||||||||||||||  ||||||||| |||||    
T  1051329 agagggaacaccgacatcccaactaggttggcacctcgggaaacctccatc 1051379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 10623247 - 10623297
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||| |||||    
T  10623247 agaggaaacaccgacatcctaactaggttggcaccccggggaacctccatc 10623297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 40
Target Start/End: Original strand, 26953963 - 26953995
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggca 40  Q
    |||||||||||||||||||||||||||||||||    
T  26953963 agaggaaacaccgacatcccaactaggttggca 26953995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 58
Target Start/End: Complemental strand, 25760086 - 25760036
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||| ||||||||||||||||||||||||||||  ||| ||||| |||||    
T  25760086 agaggcaacaccgacatcccaactaggttggcacttcggaaaacctccatc 25760036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 52
Target Start/End: Complemental strand, 10997489 - 10997449
Alignment:
Q  12 gaaacaccgacatcccaactaggttggcacaccgggaaacc 52  Q
    |||||||||||||||||| ||||||||||| ||| ||||||    
T  10997489 gaaacaccgacatcccaattaggttggcaccccgagaaacc 10997449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 27943628 - 27943658
Alignment:
Q  11 ggaaacaccgacatcccaactaggttggcac 41  Q
    |||||||||||||||||||||||||| ||||    
T  27943628 ggaaacaccgacatcccaactaggttagcac 27943658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 13781 - 13748
Alignment:
Q  18 ccgacatcccaactaggttggcacaccgggaaac 51  Q
    |||||||||||||||||||||||| |||||||||    
T  13781 ccgacatcccaactaggttggcaccccgggaaac 13748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 30; Significance: 0.00000002; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 30; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Complemental strand, 830 - 797
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcac 41  Q
    ||||| ||||||||||||||||||||||||||||    
T  830 agaggcaacaccgacatcccaactaggttggcac 797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 29; Significance: 0.00000006; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 2233 - 2281
Alignment:
Q  10 aggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    ||||||||||||| | |||||||| ||||||| |||||||||| |||||    
T  2233 aggaaacaccgacgttccaactagattggcaccccgggaaacctccatc 2281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 29; Significance: 0.00000006; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 8010 - 8054
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacc 52  Q
    |||||||| ||||||||||||||||| ||||||  ||||||||||    
T  8010 agaggaaataccgacatcccaactagattggcatcccgggaaacc 8054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 29; Significance: 0.00000006; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 29985 - 30013
Alignment:
Q  12 gaaacaccgacatcccaactaggttggca 40  Q
    |||||||||||||||||||||||||||||    
T  29985 gaaacaccgacatcccaactaggttggca 30013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.00000006; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.00000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 52774 - 52742
Alignment:
Q  9 gaggaaacaccgacatcccaactaggttggcac 41  Q
    ||||||||||||| |||||||||||||||||||    
T  52774 gaggaaacaccgaaatcccaactaggttggcac 52742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 50
Target Start/End: Complemental strand, 103772 - 103730
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaa 50  Q
    ||||| |||| ||||||||||||||||||||||| ||| ||||    
T  103772 agaggcaacatcgacatcccaactaggttggcaccccgagaaa 103730  T

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Target: scaffold0195 (Bit Score: 28; Significance: 0.0000002; HSPs: 2)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 9000 - 9031
Alignment:
Q  9 gaggaaacaccgacatcccaactaggttggca 40  Q
    |||||||||||||||| |||||||||||||||    
T  9000 gaggaaacaccgacataccaactaggttggca 9031  T

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Target: scaffold0195; HSP #2
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 40
Target Start/End: Original strand, 14389 - 14420
Alignment:
Q  9 gaggaaacaccgacatcccaactaggttggca 40  Q
    |||||||||||||||| |||||||||||||||    
T  14389 gaggaaacaccgacataccaactaggttggca 14420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 27; Significance: 0.0000009; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 27; E-Value: 0.0000009
Query Start/End: Original strand, 8 - 58
Target Start/End: Original strand, 2988 - 3038
Alignment:
Q  8 agaggaaacaccgacatcccaactaggttggcacaccgggaaacccccatc 58  Q
    |||||||||||||||||||| | ||||||||||  ||||| |||| |||||    
T  2988 agaggaaacaccgacatcccgattaggttggcatcccggggaacctccatc 3038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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