View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971-Insertion-2 (Length: 960)
Name: NF5971-Insertion-2
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971-Insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 693; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 10 - 937
Target Start/End: Complemental strand, 41119627 - 41118679
Alignment:
| Q |
10 |
tcctgtcactttctcccttccctgcatttcatcaggtttgttatccaaaatcaaactatatatatttttacgtgaatttttatcaggtttatattaattc |
109 |
Q |
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| T |
41119627 |
tcctgtcactttctcccttccctgcatttcatcaggtttgttatccaaaatcaaactatatatatttttacgtgaatttttatcaggtttatattaattc |
41119528 |
T |
|
| Q |
110 |
atgtgnnnnnnnnnnnn----attgtttgcaaattgattacatatacattatggagtttgatgattactttcttcatttttgtgcagcttcagattaatt |
205 |
Q |
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| T |
41119527 |
atgtgttttttttttttttttattgtttgcaaattgattacatatacattatggagtttgatgattactttcttcatttttgtgcagcttcagattaatt |
41119428 |
T |
|
| Q |
206 |
gaagtgataattgttttcagaatatctcgaaaagtagtgttagatacagacattttcttgcatcggaggtttcttcatatcttaatttatttttaaaaaa |
305 |
Q |
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| T |
41119427 |
gaagtgataattgttttcagaatatctcgaaaagtagtgttagatacagacattttcttgcatcagaggtttcttcatatcttattttattttaaaaaaa |
41119328 |
T |
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| Q |
306 |
ttattttatgatttaatgttacttcatgactgtagttgattgattaatgtttaaaccttaggaga----------------------ctatgcaattatg |
383 |
Q |
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| T |
41119327 |
ttattttatgatttaatgttacttcatgactgtagttgattgattaatgtttaaaccttaggagattaatgtttaaaccttaggagactatgcaattatg |
41119228 |
T |
|
| Q |
384 |
tacagtttttgtgtttggttactttatcatttaggttcttgtatattgtctactggaggatcaagaaagagagtaggaagctaacttgttcggttgctac |
483 |
Q |
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| T |
41119227 |
tacagtttttgtgtttggttactttatcatttaggttcttgtatattgtctactagaggatcaagaaagagagtaggaagctaacttgtttggttgctac |
41119128 |
T |
|
| Q |
484 |
cgaaccaaaacaagtcgaagaatccaaaatggcgacgccaacagaaacattcttgaaggattacaaaattcccgattactacttcgaaactgtatgttta |
583 |
Q |
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| T |
41119127 |
tgaaccaaaacaagtcgaagaatccaaaatggcgacgccaacagaaacattcttgaaggattacaaaattcccgattactacttcgaaactgtatgttt- |
41119029 |
T |
|
| Q |
584 |
taggagtttttagattatatttcgttcacgtgatcattacaaatttaaatttctttttacatttcttttgtctcacgttgcatcaacggattgcaggtgg |
683 |
Q |
| |
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| T |
41119028 |
---------ttagattatatttcgttcacatgatcattacaaatttaaatttctttttacatttcttttgtctcacgttgcatcaacggattgcaggtgg |
41118938 |
T |
|
| Q |
684 |
atctaaaaaatttcctta-gagaggagaagacaatagttagttctaaaatttctatgtttcctcgggtcgaa-gtagcattttatagttccattattgac |
781 |
Q |
| |
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| T |
41118937 |
atctaaaaaatttccttaggagaggagaagacaatagttagttctaaaatttccgtgtttcctcgcgtcgaaggtagcattttatagtttcattattgac |
41118838 |
T |
|
| Q |
782 |
ttgtaactttttatatatgcagtattaatcgtcctattttatgaaacaggttctact-ccccgctagttttagatggac-agatttgactttagtttcag |
879 |
Q |
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| T |
41118837 |
ttgtaactttttatatatgcagtattaatcgtcctattttatgaaacaggttctactcccccgctagttttagatggacaagaattgactttagtttcag |
41118738 |
T |
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| Q |
880 |
ttcatattaatcgcaaggccttgaa-gtata-atatatattttttgaacatctaatggaa |
937 |
Q |
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| T |
41118737 |
ttcatattaatggcaaggccttgaaggtatatatatata-tttttgaacatctaatggaa |
41118679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 168; E-Value: 2e-89
Query Start/End: Original strand, 388 - 905
Target Start/End: Complemental strand, 41108886 - 41108358
Alignment:
| Q |
388 |
gtttttgtgtttggttactttatcatttaggttcttgt-atattgtctactggaggatcaagaaagagagtaggaagctaacttgttcggttgctaccga |
486 |
Q |
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| T |
41108886 |
gtttttgtgtttggttagtttatc-tttatgttcttgttatattgtttaccagagggtcaagaaagcgagtaggaagctaatttgttcggttgctactga |
41108788 |
T |
|
| Q |
487 |
accaaaacaagtcgaagaatccaaaatggcgacgccaacagaaacattcttgaaggattacaaaattcccgattactacttcgaaactgtatgtttatag |
586 |
Q |
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| T |
41108787 |
atcaaagcaagttgaagaatccaaaatggcgatgccaacagaaatattcttgaaggattacaaaatgcctgattactactttgagaaagtaagtttagag |
41108688 |
T |
|
| Q |
587 |
gagtttttagattatatttcgttcacgtgatcattacaaatttaaatttctttttacatttcttttgtctcacgttgcatcaacggattgcaggtggatc |
686 |
Q |
| |
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| T |
41108687 |
gagtttttagattatgtttcgttcac---accattgccaattttaaaat-tttttaaattgttttgttcccatgttgcatggaactattgcaggtggatc |
41108592 |
T |
|
| Q |
687 |
taaaaaatttcctta-gagaggagaagacaatagttagttctaaaatttctatgtttcctcgggtcgaa-gtagcattttatagttccattattgacttg |
784 |
Q |
| |
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| ||| |||||||| |||||||||||||||||||||| |||||||||||| |||||||||| || ||| ||||| ||||| ||| |||||||| |||| |
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| T |
41108591 |
t-gaaattttccttaggagaggagaagacaatagttagctctaaaatttctgtgtttcctcgcgttgaaggtagccctttatggtttcattattggcttg |
41108493 |
T |
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| Q |
785 |
taacttttta------------tatatgcagtattaatcgtcctattttatgaaacaggttctactcc-ccgctagttttagatggac-agatttgactt |
870 |
Q |
| |
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| T |
41108492 |
taactttttagataagcagaactatattcagcatcaatcgtcctattttatgacacaggttctactcctccgctagttttagatggacaagacatgactt |
41108393 |
T |
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| Q |
871 |
tagtttcagttcatattaatcgcaaggccttgaag |
905 |
Q |
| |
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| T |
41108392 |
tagtttcagttcatgtaaatggcaaggcattgaag |
41108358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 177 - 277
Target Start/End: Complemental strand, 41109176 - 41109077
Alignment:
| Q |
177 |
cttcatttttgtgcagcttcagattaattgaagtgataattgttttcagaatatctcgaaaagtagtgttagatacagacattttcttgcatcggaggtt |
276 |
Q |
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|||||||||| |||||||||||||||||| |||| ||||||||||| ||| ||||| ||||||||||| ||||| |||||||| |||||||| |||||| |
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| T |
41109176 |
cttcattttt-tgcagcttcagattaattccagtgttaattgttttcggaacatctccaaaagtagtgtcagatatagacatttccttgcatcagaggtt |
41109078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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