View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5971-Insertion-4 (Length: 870)
Name: NF5971-Insertion-4
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971-Insertion-4 |
 | |
|
| [»] chr8 (5 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-123; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 540 - 870
Target Start/End: Original strand, 36325995 - 36326324
Alignment:
| Q |
540 |
catttttaactcaaaatgaaaaactattcatagtaactgttctannnnnnnnnctttcttt--aaaaatgaagaattgaagccttaaagagtttcaaatc |
637 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
36325995 |
catttttaactcgaaatgaaaaactattcatagtaactgttctatttttttt-ctttctttttaaaaatgaagaattgaagccttaa-gagtttcaaatc |
36326092 |
T |
|
| Q |
638 |
ttatnnnnnnngtttttaataatagtaaataaacaaaatttaagcttcaacttctttcgaaaatctttagaattttttaaaataaagtcttatttaagcc |
737 |
Q |
| |
|
|||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36326093 |
ttataaaaaatgattttaatgatagtaaataaacaaaatttaagcttcaacttctttcgaaaatctttagaattttttaaaacaaagtcttatttaagcc |
36326192 |
T |
|
| Q |
738 |
aaaataaacacaccttatatgggtctagaggacatcaaacttggtcaaagcttagaaagaattgggcaatgaggcaatcaactcatgctccatgtttgtg |
837 |
Q |
| |
|
|||| ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36326193 |
aaaacaaacacaccttatatggatcttgaggacatcaaacttggtcaaagcttag-aagaattgggcaatgaggcaatcaactcatgctccatgtttgtg |
36326291 |
T |
|
| Q |
838 |
gctctagtgaccaaaaagagcaataagcacgaa |
870 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36326292 |
gctctagtgaccaaaaagagcaataagcacgaa |
36326324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 9e-94
Query Start/End: Original strand, 232 - 467
Target Start/End: Original strand, 36325691 - 36325925
Alignment:
| Q |
232 |
acaaatgtaagtttgttaagttagaggctattttatttttaagaaagttagaagctattgcttttgtttacgcttaaaagcaattannnnnnnatgtgaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| ||||||| |
|
|
| T |
36325691 |
acaaatgtaagtttgttaagttagaggctattttatttttaagaaagttagaagctattg-ttttgtttacacttaaaagtaattattattttatgtgaa |
36325789 |
T |
|
| Q |
332 |
attggaagatagatgttgaaaggatatactaatttccttcagccgaatgcagattaagtgaccactattattacaagtcgaattagggttagtcgattct |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36325790 |
attggaagatagatgttgaaaggatatactaatttccttcagccgaatgcatattaagtgactgctattattacaagtcgaactagggttagtcgattct |
36325889 |
T |
|
| Q |
432 |
ttctcgagtctactgaatagtaatagtatgtgactc |
467 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
36325890 |
ttttcgagtctattgaatagtaatagtatgtgactc |
36325925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 8 - 184
Target Start/End: Original strand, 36325057 - 36325233
Alignment:
| Q |
8 |
acttgttgctttctttactgagcttgatcaatttctttgtctatttggtagtttcaaagaggtacaagtataggcctcaaggtcctgcaattaaaggtgt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36325057 |
acttgttgctttctttactgagcttgatcaatttctttgtctatttggtagtttcaaagaggtacaagtataggcctcaaggtcatgcaattaaaggtgt |
36325156 |
T |
|
| Q |
108 |
ggattctcaatagagaatatatgattaacaagtagtaagtgtaaaatttgtgggctatgctttttttatttgtaaaa |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36325157 |
ggattctcaatagagaatatatgattaacaagtagtaagtgtaaaatttgtgggctatgctttttttatttgtaaaa |
36325233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 8 - 157
Target Start/End: Original strand, 36332318 - 36332467
Alignment:
| Q |
8 |
acttgttgctttctttactgagcttgatcaatttctttgtctatttggtagtttcaaagaggtacaagtataggcctcaaggtcctgcaattaaaggtgt |
107 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||| |
|
|
| T |
36332318 |
acttgttgctttctttgatcagcttgatcaatttctttgtttatttggtaatttcaaagaggtataagtataggcctcaaggtcctactgttaaaggtgt |
36332417 |
T |
|
| Q |
108 |
ggattctcaatagagaatatatgattaacaagtagtaagtgtaaaatttg |
157 |
Q |
| |
|
||||||||||||| ||||||||| ||||| | |||||||| |||||||| |
|
|
| T |
36332418 |
ggattctcaatagggaatatatggttaaccaatagtaagttaaaaatttg |
36332467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 176 - 214
Target Start/End: Original strand, 36325632 - 36325670
Alignment:
| Q |
176 |
tttgtaaaatgtacgtttctcttacttgtaagtttgtga |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36325632 |
tttgtaaaatgtacgtttctcttacttgtaagtttgtga |
36325670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 5460334 - 5460398
Alignment:
| Q |
26 |
tgagcttgatcaatttctttgtctatttggtagtttcaaagaggtacaagtataggcctcaaggt |
90 |
Q |
| |
|
||||||||||||| ||||||||||||||| | ||||||||||| ||||| || || ||||||||| |
|
|
| T |
5460334 |
tgagcttgatcaacttctttgtctatttgtttgtttcaaagagatacaaatacagacctcaaggt |
5460398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University