View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971-Insertion-6 (Length: 800)
Name: NF5971-Insertion-6
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971-Insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 11 - 282
Target Start/End: Original strand, 43677451 - 43677719
Alignment:
| Q |
11 |
gttcagttctgttctgatatgttggttactggaacaaaataagttaaggatttgtttggggtgtgtttcagtccaatctaaaagagannnnnnnnnnnna |
110 |
Q |
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| T |
43677451 |
gttcagttctgttctgatatgttggttactggaacaaaataagttaaggatttgtttggggtgtgtttcagtccaatctaaaagagatttttttttg--a |
43677548 |
T |
|
| Q |
111 |
agtagtgtgtttgttgtggtgtggaagtggtagttgagttgatacnnnnnnntctactgattaagttaagatttgggagaacatatgggttgggtgggac |
210 |
Q |
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| T |
43677549 |
agtagtgtgtttgttgtggtgtggaagcggtagttgagttgatacaaaaaa-tctactgattaagttaagatttgggagaacaaatgggttgggtgggac |
43677647 |
T |
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| Q |
211 |
ctttctgggtattggtcgttattattgggtgaaagtttgccaagcagaacttggaagcattgaaagaagctg |
282 |
Q |
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| T |
43677648 |
ctttctgggtattggtcgttattattgggtgaaagtttgccaagcagaacttggaagcattgaaagaagctg |
43677719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 312 - 550
Target Start/End: Original strand, 43677749 - 43677982
Alignment:
| Q |
312 |
atatagcttatgtagcatactaaaaaagtatttaacaatattttattttttgcaataaatgtttgtgctatgaacaataataaatataannnnnnnnnnn |
411 |
Q |
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| T |
43677749 |
atatagcttatgtagcatattaaaaaagtatttaacaatattttattttttgcaataaatgtttgtgctatgaacaataa---atataattttttttttt |
43677845 |
T |
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| Q |
412 |
ngaaaaaaacgctccaaaatatatatatttttttgnnnnnnnnnnnctacaaacaagttatttattcaaacaaactttggctttcttaattcataccact |
511 |
Q |
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| T |
43677846 |
-gaaaaaaacactacaaaatatatttttgttttt-tgaaaaaaaaactacaaacaagttatttattcaaacaaactttggctttcttaattcataccact |
43677943 |
T |
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| Q |
512 |
tgttttcacttgacggcttgccgtggagaccaagactca |
550 |
Q |
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| T |
43677944 |
tgttttcacttgacggcttgccgtggagaccaagactca |
43677982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 581 - 704
Target Start/End: Original strand, 31482549 - 31482672
Alignment:
| Q |
581 |
cggaccggtccaatcgggatccggtggtatgtccggttcgagcgagtagttggatcgggcatgtaattggcccgtagaaaaccggtgtgaaccggacggt |
680 |
Q |
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| T |
31482549 |
cggaccggtccaaccgggactcggtggtatgtccggttcgagcgagtagttggatcaggcatgtaattggcccgtaggaaaccggtgtgaaccggacagt |
31482648 |
T |
|
| Q |
681 |
ttccggtcaaaccggccactcggt |
704 |
Q |
| |
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| T |
31482649 |
ttccggtcaaaccggtcactcggt |
31482672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 574 - 730
Target Start/End: Original strand, 26747274 - 26747430
Alignment:
| Q |
574 |
accggaccggaccggtccaatcgggatccggtggtatgtccggttcgagcgagtagttggatcgggcatgtaattggcccgtagaaaaccggtgtgaacc |
673 |
Q |
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| T |
26747274 |
accggaccgaaccggtccaaccaggattcggtggaatgtccagtacgagcgagtagttggatcgggcatgtaattggcccgtcggaaaccggtgtgaacc |
26747373 |
T |
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| Q |
674 |
ggacggtttccggtcaaaccggccactcggtgggcttatgaaccgaaccggttttct |
730 |
Q |
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||||| ||||||||||||||| |||||||| || ||||||||| |||| |||||| |
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| T |
26747374 |
ggacgatttccggtcaaaccgatcactcggtaggtatatgaaccgcaccgattttct |
26747430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 7e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 581 - 731
Target Start/End: Original strand, 37254980 - 37255129
Alignment:
| Q |
581 |
cggaccggtccaatcgggatccggtggtatgtccggttcgagcgagtagttggatcgggcatgtaattggcccgtagaaaaccggtgtgaaccggacggt |
680 |
Q |
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| T |
37254980 |
cggaccggtctaaccgggacttggtggtatgtccggttcgagcaagtagttggatcgggcatgtaatttgcccgtag-gaaccggtgtgaaccggatggt |
37255078 |
T |
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| Q |
681 |
ttccggtcaaaccggccactcggtgggcttatgaaccgaaccggttttctg |
731 |
Q |
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||||||||||||||| |||||||| || || |||||| |||||||||||| |
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| T |
37255079 |
ttccggtcaaaccggtcactcggtaggtatacgaaccggaccggttttctg |
37255129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 581 - 706
Target Start/End: Complemental strand, 25511489 - 25511364
Alignment:
| Q |
581 |
cggaccggtccaatcgggatccggtggtatgtccggttcgagcgagtagttggatcgggcatgtaattggcccgtagaaaaccggtgtgaaccggacggt |
680 |
Q |
| |
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||||||||||||| | ||| ||||| ||| ||||||||||| |||||||||||| ||| ||||| |||| ||||||| |||||||| |||| |
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| T |
25511489 |
cggaccggtccaaccaggaaccggtaacatgaccggttcgagcagatagttggatcggatatgcaattgaaccgtgacgaaccggtatgaaccggccggt |
25511390 |
T |
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| Q |
681 |
ttccggtcaaaccggccactcggtgg |
706 |
Q |
| |
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|||| |||||||||| ||||||||| |
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| T |
25511389 |
ttcctgtcaaaccggtgactcggtgg |
25511364 |
T |
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