View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5971-Insertion-7 (Length: 545)
Name: NF5971-Insertion-7
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971-Insertion-7 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 545
Target Start/End: Original strand, 5273242 - 5273771
Alignment:
| Q |
9 |
caatcaagtagtaatctcaagtgtcctaaacactaatcaacattcaaaactctttaaaacaattacttactacaatgatgaaactacgatctcttttctt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5273242 |
caatcaagtagtaatctcaagtgtcctaaacactaatcaacattcaaaactctttaaa-caattacttactacaatgatgaaactacgatctcttttctt |
5273340 |
T |
|
| Q |
109 |
tgcctcaattctacagctactaattctcaccctctactattccactaccacctcagcacaaatctcaccagttcaatctccacaagcctctacaccagca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5273341 |
tgcctcaattctacagctactaattctcaccctctactattccactaccacctcagcacaaatctcaccagttcaatctccacaagcctctacaccagca |
5273440 |
T |
|
| Q |
209 |
ccaggtttcaacacagtcccccttgtaccagtaaccccgagtggggcccccaccccaaatattctcccaaaatcaccatccatagacattatccaaatcc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5273441 |
ccaggtttcaacacagtcccccttgtaccagtaaccccgagtggggcccccacccctaatattctcccaaaatcaccatccatagacattatccaaatcc |
5273540 |
T |
|
| Q |
309 |
tcnnnnnnnnnnnnngattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagttannnnnnnnnnnnnnnn |
408 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5273541 |
tcaaaaaagcaaaaagattctcagttctcattcgtcttctcaaaacaactcagttaataaaccaactcaactcacaactagtta------catcatcatc |
5273634 |
T |
|
| Q |
409 |
nnnngattctagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacac |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5273635 |
atcagattctagcagtggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacac |
5273734 |
T |
|
| Q |
509 |
aaagtagaactgttacaattccatacactttcctcat |
545 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5273735 |
aaagtagaactgttacaattccacacactttcctcat |
5273771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 425 - 525
Target Start/End: Original strand, 36151143 - 36151243
Alignment:
| Q |
425 |
ggtggcttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttac |
524 |
Q |
| |
|
||||| |||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| |||| |
|
|
| T |
36151143 |
ggtgggttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttac |
36151242 |
T |
|
| Q |
525 |
a |
525 |
Q |
| |
|
| |
|
|
| T |
36151243 |
a |
36151243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 431 - 525
Target Start/End: Original strand, 36154535 - 36154629
Alignment:
| Q |
431 |
ttaaccctttttgcaccagaagacaatgccttttcaaaactcaaaccaggtttccttaattccctcagtgacagacacaaagtagaactgttaca |
525 |
Q |
| |
|
|||||| |||||||||||||||| ||| || || ||||||||| |||| ||||| || ||||||| ||| ||||| ||||| ||||| ||||| |
|
|
| T |
36154535 |
ttaaccatttttgcaccagaagattctgcattctccaaactcaaagcagggttcctcaactccctcactgatagacaaaaagtcgaactcttaca |
36154629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University