View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5971-Insertion-8 (Length: 540)

Name: NF5971-Insertion-8
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5971-Insertion-8
NF5971-Insertion-8
[»] chr8 (1 HSPs)
chr8 (68-189)||(6141326-6141445)
[»] scaffold0003 (2 HSPs)
scaffold0003 (156-240)||(65550-65633)
scaffold0003 (298-411)||(66044-66154)
[»] chr6 (6 HSPs)
chr6 (156-240)||(27421730-27421813)
chr6 (156-198)||(26651754-26651796)
chr6 (156-198)||(26757722-26757764)
chr6 (252-354)||(31394623-31394732)
chr6 (480-540)||(31394870-31394930)
chr6 (298-411)||(27421209-27421319)


Alignment Details
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 6141326 - 6141445
Alignment:
Q  68 gagtaaaagcctagaaggtcaataagatatgtaatatatgtgagaataccatcaccagaatatcgataatttgttaaagt-ccaccaacaatattcagat 166  Q
    |||||| |||||| ||||||||||||||||||    ||||||||||||||||||||| |||||| | ||||||||||| | |||||||||||||||||||    
T  6141326 gagtaagagcctacaaggtcaataagatatgtt---tatgtgagaataccatcaccaaaatatctacaatttgttaaaattccaccaacaatattcagat 6141422  T
Q  167 gatcaacttcaaaaaccttagca 189  Q
     ||||||||||||| ||||||||    
T  6141423 aatcaacttcaaaagccttagca 6141445  T

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Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 240
Target Start/End: Original strand, 65550 - 65633
Alignment:
Q  156 aatattcagatgatcaacttcaaaaaccttagcacaaatttgatgaatatagtttaccaaaataagtaattgaagaatccctcaa 240  Q
    |||||||| ||||||||||||||||||||||||||| |||||| || | || ||||||| || |||||||| ||| |||||||||    
T  65550 aatattcatatgatcaacttcaaaaaccttagcacatatttgacgagtgtattttaccataa-aagtaattaaagcatccctcaa 65633  T

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Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 411
Target Start/End: Original strand, 66044 - 66154
Alignment:
Q  298 agattatggctcacatcagtgtcataaaaaatttgtgtctttggtcaaagacacttataagaaagacttcccaaccaggtcgactgtgaggattccctat 397  Q
    |||||||||||||||||||||  | |||||| |||||| |  |||   |||| |||| |||| || ||||| |||| | |||| ||||||||||||||||    
T  66044 agattatggctcacatcagtgcta-aaaaaagttgtgtat--ggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctat 66140  T
Q  398 gaacattccttgac 411  Q
    | ||||||||||||    
T  66141 ggacattccttgac 66154  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 240
Target Start/End: Complemental strand, 27421813 - 27421730
Alignment:
Q  156 aatattcagatgatcaacttcaaaaaccttagcacaaatttgatgaatatagtttaccaaaataagtaattgaagaatccctcaa 240  Q
    |||||||| ||||||||||||||||||||||||||| |||||| || | || ||||||| || |||||||| ||| |||||||||    
T  27421813 aatattcatatgatcaacttcaaaaaccttagcacatatttgacgagtgtattttaccataa-aagtaattaaagcatccctcaa 27421730  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 26651754 - 26651796
Alignment:
Q  156 aatattcagatgatcaacttcaaaaaccttagcacaaatttga 198  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  26651754 aatattcagatgatcaacttcaaaaaccttggcacatatttga 26651796  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 26757722 - 26757764
Alignment:
Q  156 aatattcagatgatcaacttcaaaaaccttagcacaaatttga 198  Q
    |||||||||||||||||||||||||||||| ||||| ||||||    
T  26757722 aatattcagatgatcaacttcaaaaaccttggcacatatttga 26757764  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 354
Target Start/End: Original strand, 31394623 - 31394732
Alignment:
Q  252 gttgcgaaatttgtgttttcacaatgaattattgac---aacagcgtagagatt----atggctcacatcagtgtcataaaaaatttgtgtctttggtca 344  Q
    |||| ||||||||  |||| ||||||||||||||||    |||| |||||||||    ||||||||||||| ||||||||||||||||||| |||| | |    
T  31394623 gttgtgaaatttgcattttgacaatgaattattgacgatgacagtgtagagattatgcatggctcacatcattgtcataaaaaatttgtgtgtttgctta 31394722  T
Q  345 aagacactta 354  Q
     |||||||||    
T  31394723 gagacactta 31394732  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 480 - 540
Target Start/End: Original strand, 31394870 - 31394930
Alignment:
Q  480 atgaacactgatttcgttattgggcggcgatttccgataatttctgtcacacgttttctcc 540  Q
    |||||| | ||||||||||||||||||| ||||| ||| ||||||||||||  ||||||||    
T  31394870 atgaacgcagatttcgttattgggcggcaatttctgatcatttctgtcacagtttttctcc 31394930  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 298 - 411
Target Start/End: Complemental strand, 27421319 - 27421209
Alignment:
Q  298 agattatggctcacatcagtgtcataaaaaatttgtgtctttggtcaaagacacttataagaaagacttcccaaccaggtcgactgtgaggattccctat 397  Q
    |||||||||||||||||||||  | |||||| |||||| |  |||   |||| |||| |||| || ||||| |||| | |||| ||||||||||||||||    
T  27421319 agattatggctcacatcagtgcta-aaaaaagttgtgtat--ggttggagactcttacaagataggcttcctaaccggctcgattgtgaggattccctat 27421223  T
Q  398 gaacattccttgac 411  Q
    | ||||||||||||    
T  27421222 ggacattccttgac 27421209  T

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