View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971_high_17 (Length: 222)
Name: NF5971_high_17
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 5273444 - 5273242
Alignment:
| Q |
1 |
ctggtgctggtgtagaggcttgtggagattgaactggtgagatttgtgctgaggtggtagtggaatagtagagggtgagaattagtagctgtagaattga |
100 |
Q |
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| T |
5273444 |
ctggtgctggtgtagaggcttgtggagattgaactggtgagatttgtgctgaggtggtagtggaatagtagagggtgagaattagtagctgtagaattga |
5273345 |
T |
|
| Q |
101 |
ggcaaagaaaagagatcgtagtttcatcattgtagtaagtaattgttttaaagagttttgaatgttgattagtgtttaggacacttgagattactacttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5273344 |
ggcaaagaaaagagatcgtagtttcatcattgtagtaagtaattg-tttaaagagttttgaatgttgattagtgtttaggacacttgagattactacttg |
5273246 |
T |
|
| Q |
201 |
attg |
204 |
Q |
| |
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|||| |
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| T |
5273245 |
attg |
5273242 |
T |
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