View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5971_high_19 (Length: 217)

Name: NF5971_high_19

Description: NF5971

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5971_high_19

[»] chr3 (1 HSPs)

[»] chr5 (1 HSPs)

Target: chr3 (Bit Score: 149; Significance: 7e-79; HSPs: 1)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 149; E-Value: 7e-79

Query Start/End: Original strand, 1 - 176

Target Start/End: Complemental strand, 24227459 - 24227283

Alignment:

Q	1	cttttgtttttagtactcagcaatggtggtcgtgcccttttgtctgttcgggcatcgactaatgctgatgttgtatgtttgtgaattggatactctttgt	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24227459	cttttgtttttagtactcagcaatggtggtcgtgcccttttgtctgtttgggcatcgactaatgctgatgttgtatgtttgtgaattggatactctttgt	24227360	T

Q	101	tccttttaatagtctcaaagacacatcttatactttcggaattgctctattgt-gttataaaatctcattttgactt	176	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	24227359	tccttttaatagtctcaaaggcgcatcttatactttcgaaattgctttattgtagttataaaatctcattttgactt	24227283	T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 1 - 107

Target Start/End: Complemental strand, 587160 - 587054

Alignment:

Q	1	cttttgtttttagtactcagcaatggtggtcgtgcccttttgtctgttcgggcatcgactaatgctgatgttgtatgtttgtgaattggatactctttgt	100	Q
		\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\| \|\| \|\|\|\|\| \| \|\|\|\| \| \|\|\|\|\|\|\|
T	587160	cttttgtttttggtacacaacaatggtagtcgtgcccttttgtttgtttggacatcggctaatgcgggtgttgaatatttgtaacttgggtcctctttga	587061	T

Q	101	tcctttt	107	Q
		\|\|\|\|\|\|\|
T	587060	tcctttt	587054	T

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