View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971_high_5 (Length: 377)
Name: NF5971_high_5
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 51996001 - 51996044
Alignment:
| Q |
311 |
aggctctttgatatgctgcaataaaggacacaagttcaacccaa |
354 |
Q |
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| T |
51996001 |
aggctctttgatatgctgcaataaaggacacaacttcaacccaa |
51996044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 311 - 354
Target Start/End: Original strand, 52008533 - 52008576
Alignment:
| Q |
311 |
aggctctttgatatgctgcaataaaggacacaagttcaacccaa |
354 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
52008533 |
aggctctttgatatgctgcaataaaggacacaacttcaacccaa |
52008576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 74
Target Start/End: Original strand, 52008081 - 52008118
Alignment:
| Q |
37 |
tcattttaatctctgttaattccatagcaaaagtttgt |
74 |
Q |
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| T |
52008081 |
tcattttaatctctgttaatttcatagcaaaattttgt |
52008118 |
T |
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