View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971_high_6 (Length: 364)
Name: NF5971_high_6
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 356
Target Start/End: Original strand, 39716614 - 39716951
Alignment:
| Q |
19 |
acagcttccacttaaaggaataattcagacagtaattaccaattacataaaactaacaagcattcaaaagccaaaatagttaaaattgaaatagttcaaa |
118 |
Q |
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| T |
39716614 |
acagcttccacttaaaggaataattcagacagtaattaccaattacataaaactaacaagcattcaaaagccaaaatagttaaaattgaaatagttcaaa |
39716713 |
T |
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| Q |
119 |
tgtctcatttggtcacagtgataaatgttatagtcccctaatccactccatctgctatctccttccaatcaaaaagcgacctacagtggattgaaacaac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39716714 |
tgtctcatttggtcacagtgataaatgttatagtcccctaatccactccatctgctatctccttccaatcaaaaagcgacctacagtggattgaaacaac |
39716813 |
T |
|
| Q |
219 |
ggtgaatgagtaatttatgtgcctaaaacaaagccaaacatgatgttaagttcaaacagtaacaacaaaatagcagcagcagaaaatgccctcccaccca |
318 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39716814 |
ggtgaatgagtaatttatgtgccaaaaacaaagccaaacatgatgttaagttcaaacagtaacaacaaaatagcagcagcagaaaatgccctcccaccca |
39716913 |
T |
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| Q |
319 |
aaaattacatcaacatccattaattaattacctatgct |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
39716914 |
aaaattacatcaacatccattaattaattacctatgct |
39716951 |
T |
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