View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971_high_7 (Length: 364)
Name: NF5971_high_7
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 135 - 345
Target Start/End: Original strand, 999959 - 1000175
Alignment:
| Q |
135 |
ttagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagatactatactaatgttttaattttaataagaccctaaa |
234 |
Q |
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| T |
999959 |
ttagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagatactatactaatgttttaattttaataagaccctaaa |
1000058 |
T |
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| Q |
235 |
atataaaataaccagcaatattgcctaggagttcccattaccaatctcttcc------tcaagctttttgtcttctgcatcttctgcctcctcctctagt |
328 |
Q |
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| T |
1000059 |
atataaaataaccagcaatattgcctaggagttcccattaccaatctctttcctcaagtcaagctttttgtcttctgcatcttctgcctcctcctctagt |
1000158 |
T |
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| Q |
329 |
gaatcctcttcactagt |
345 |
Q |
| |
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||||||||||||||||| |
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| T |
1000159 |
gaatcctcttcactagt |
1000175 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 999837 - 999913
Alignment:
| Q |
13 |
aatatccaaagaacgactttagaagtattgcattatgattttagtacctttgagttttcaacttacttagagttatg |
89 |
Q |
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| T |
999837 |
aatatccaaagaacgaatttagaagtactgcattatgattatagtacctttgagttttcaacttacatagagttatg |
999913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 6969261 - 6969139
Alignment:
| Q |
135 |
ttagcacattaatctaacttatattaatgtaaatcaagacactaatgtaagcatagaaatagatact-atactaatgttttaattttaataagaccctaa |
233 |
Q |
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|||||| |||||||||||||||| ||| |||||| ||||| | |||||||||||||||||||| | | ||||||||| |||||||||||| || |
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| T |
6969261 |
ttagcatattaatctaacttataataaagtaaattaagactcgaatgtaagcatagaaatagagattcatactaatg------ttttaataagactct-- |
6969170 |
T |
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| Q |
234 |
aatataaaataaccagcaatattgcctagga |
264 |
Q |
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| T |
6969169 |
aatataaaataactagcaatattgcctagga |
6969139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 345
Target Start/End: Original strand, 51315927 - 51316020
Alignment:
| Q |
252 |
atattgcctaggagttcccattaccaatctcttcctcaagctttttgtcttctgcatcttctgcctcctcctctagtgaatcctcttcactagt |
345 |
Q |
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|||| |||||||| || |||||| |||||||||||||||||| ||||| || | |||||||||||||| |||| |||||||||| ||||||| |
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| T |
51315927 |
atatggcctaggactttccattatcaatctcttcctcaagctccttgtcctcagtatcttctgcctccttctctgatgaatcctctccactagt |
51316020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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