View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971_high_9 (Length: 316)
Name: NF5971_high_9
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 268
Target Start/End: Original strand, 8060540 - 8060790
Alignment:
| Q |
17 |
caacttacacttagactttttgtttgagtttgaggaaaagggacaattttaagcaggaagaaggacaagggacgataatcttttatccatttggaggatt |
116 |
Q |
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| T |
8060540 |
caacttacacttagactttttgtttgagtttgaggaaaagggacaattttaagcaggaagaaggaaaagggacgataatcttttatccatttggaggatt |
8060639 |
T |
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| Q |
117 |
tttgagagaaaacttaagaccaatatttgcaagatgnnnnnnnttgaagaatatttcaaaatcttctaaaacaatccaaactctcaattcatattttgag |
216 |
Q |
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| T |
8060640 |
tttgagagaaaacttaagaccaatatttgcaagatgaaaagaattgaagaatatttgaaaatcttctaaaacaatccaaactctcaattcatattttgag |
8060739 |
T |
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| Q |
217 |
tttttcaaattgtgagttttagataagaaaaagtgcggaggaagatctacac |
268 |
Q |
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| T |
8060740 |
tttttcaaattgtgagttttagataag-aaaagtgcggaggaagatctacac |
8060790 |
T |
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