View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971_low_11 (Length: 284)
Name: NF5971_low_11
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 280
Target Start/End: Original strand, 39114481 - 39114743
Alignment:
| Q |
18 |
gatacatatacattgatattaatttaaaattatcatagtgattgaatgtctatagtttctaaaattacaacctttccagtatttttctcttgacaaatcc |
117 |
Q |
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| T |
39114481 |
gatacatatgtattgatattaatttaaaattatcatagtgattgaatgtctatagtttctaaaattacaacctttccagtatttttctcttgacaaatcc |
39114580 |
T |
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| Q |
118 |
ctgatcgtctcttaaggggtcaaccattgtgtttccaaggaaaaaagggagatgacttaagtttaggacaatcattattcatcagttagaaactagaaag |
217 |
Q |
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| T |
39114581 |
ctgatcgtctcttaaggggtcaaccattgtgtttccaaggaaaaaagggagatgacttaagtttaggacaatcattattcatcagttagaaactagaaag |
39114680 |
T |
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| Q |
218 |
tattaactgccattgtaaagtgaatagcttaataaattggggcaatgtttgagagacctatgc |
280 |
Q |
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| T |
39114681 |
tattaactgccattttaaagtgaatagcttaataaattggggcaatgtttaagagacctatgc |
39114743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 12232854 - 12233031
Alignment:
| Q |
22 |
catatacattgatattaatttaaaattatcatagtgattgaatgtctatagtttctaaaattacaacctttccagtatttttctcttgacaaatccctga |
121 |
Q |
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| T |
12232854 |
catatacattaatattaatttaaaattataaaaatgattgaatgtctatagtttccaaaattacaacatttccagtatttttctcttgacgaatccctaa |
12232953 |
T |
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| Q |
122 |
tcgtctcttaaggggtcaaccattgtgtttccaaggaaaaaagggagatgacttaagtttaggacaatcattattcat |
199 |
Q |
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| T |
12232954 |
ttgtctcttaaggggtcaaccactgtgtttccaaggaaaaagaggtgacgacttaagtttagaacggtcattattcat |
12233031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 12227789 - 12228025
Alignment:
| Q |
18 |
gatacatatacattgatattaatttaaaattatcatagtgattgaatgt-----------ctatagtttctaaaattacaacctttccag-tatttttct |
105 |
Q |
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| T |
12227789 |
gatacatacacattgatattaatttaaaattataaaaatgattgagtgtaaccactgctgctatagtttccaaaactacaacctttcttggtatttttct |
12227888 |
T |
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| Q |
106 |
cttgacaaatccctgatcgtctcttaaggggtcaaccattgtgtttccaaggaaaaaagggagatgacttaagtttaggacaatcattattcatcagtta |
205 |
Q |
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| T |
12227889 |
cttgacgaatccatgattgtctcttaaggggtcaaccactgtgtttccaaggaaaaagaggagatgacttaagttgagaacagtcattattcatcaattg |
12227988 |
T |
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| Q |
206 |
gaaactagaaagtattaactgccattgtaaagtgaat |
242 |
Q |
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| T |
12227989 |
gaaattaggaagcactaattgtcattgtaaaatgaat |
12228025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 241
Target Start/End: Original strand, 12249712 - 12249822
Alignment:
| Q |
130 |
taaggggtcaaccattgtgtttccaaggaaaaaagggagatgacttaagtttaggacaatcattattcatcagttagaaactagaaagtattaactgcca |
229 |
Q |
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| T |
12249712 |
taaggggtcaaccactgtgtttccaaggaacaa-gggagctgacttaagtttagaacagtcattattcatcaattagaaacttgaaagtactaattgtca |
12249810 |
T |
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| Q |
230 |
ttgtaaagtgaa |
241 |
Q |
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| T |
12249811 |
ttgtaaaatgaa |
12249822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 12242036 - 12242103
Alignment:
| Q |
95 |
agtatttttctcttgacaaatccctgatcgtctcttaag---gggtcaaccattgtgtttccaaggaa |
159 |
Q |
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| T |
12242036 |
agtatttttctcttgacgaatacttgattgtctgttaagaaggggtcaaccattgtgtttccaaggaa |
12242103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 12236272 - 12236352
Alignment:
| Q |
99 |
tttttctcttgacaaatccctgatcgtctcttaag---gggtcaaccattgtgtttccaaggaaaaaagggagatgactta |
176 |
Q |
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| T |
12236272 |
tttttctcttgacgcatccctgattgtctcttaagaatgggtcaaccattaagtttcccaggaacaaggggagctgactta |
12236352 |
T |
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