View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971_low_12 (Length: 255)
Name: NF5971_low_12
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33383507 - 33383741
Alignment:
| Q |
1 |
tatgaagttgctttgttatctcaataatttcagtgattttagctaaaaacaaatagttaattcaagtatatcacaactgtccaaaccatcatcatttgcc |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33383507 |
tatgaagttgatttgttatctcaataatttcagtgatttgagctaaaaacaaatagttaattcaagtatatcacaactgtgcaaaccatcatcatttgcc |
33383606 |
T |
|
| Q |
101 |
tcaagtagtgatggaagcattaatgttggtccaccattattgttactctctctttatttttcaggaacttggataaattctcacctagcccttatcatta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383607 |
tcaagtagtgatggaagcattaatgttggtccaccattattgttactctctctttatttttcaggaacttggataaattctcacctagcccttatcatta |
33383706 |
T |
|
| Q |
201 |
actcacaacattgaaattcttaattgtgtagggta |
235 |
Q |
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||| ||||||||||||||||||||||||||||||| |
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| T |
33383707 |
acttacaacattgaaattcttaattgtgtagggta |
33383741 |
T |
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