View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971_low_13 (Length: 251)
Name: NF5971_low_13
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971_low_13 |
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| [»] scaffold0184 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 33383322 - 33383086
Alignment:
| Q |
1 |
ttcatcttccataatcctcttcacagctttttccagtgcatcccattgaacact-atctccctccaatccaacccattttttaactccaacaggtacacc |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383322 |
ttcatcttccataatcctcttcacagctttttccagtgcatcccattgaacacttatctccctccaatccaacccattttttaactccaacaggtacacc |
33383223 |
T |
|
| Q |
100 |
aattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaact |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33383222 |
aattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaaccacaccttctaaaact |
33383123 |
T |
|
| Q |
200 |
gaattccatccacaatgagtcacaaatgctccaattg |
236 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
33383122 |
gaattccatccacaatgagtcacaaatgctccaattg |
33383086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 33390738 - 33390966
Alignment:
| Q |
6 |
cttccataatcctcttcacagctttttccagtgcatcccattgaacactatctccctccaatccaacccattttttaactccaacaggtacaccaatttt |
105 |
Q |
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||||||||| | |||||||||| || |||| ||||||||| ||||| |||| | | || |||| ||||| ||||| |||||||||||||||||||||| |
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| T |
33390738 |
cttccataaccttcttcacagccttctccactgcatcccaatgaactttatcactcacctttccatcccatgttttagctccaacaggtacaccaatttt |
33390837 |
T |
|
| Q |
106 |
aagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattc |
205 |
Q |
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| T |
33390838 |
aagtacatcagttaccaacttctcattataaaattgctcaggagctataggccaagtaatcataggtactccagcagctacactttccaaagttaagttc |
33390937 |
T |
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| Q |
206 |
catccacaatgagtcacaaatgctccaat |
234 |
Q |
| |
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| T |
33390938 |
catccacaatgagtcacaattgctccaat |
33390966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Original strand, 33401723 - 33401823
Alignment:
| Q |
121 |
caacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattccatccacaatgagtc |
220 |
Q |
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||||||||||||| |||||| ||||| | || |||||||| | |||||||| |||||| |||||||||||| ||| |||||||||||||||||| |
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| T |
33401723 |
caacttctcattgataaattgctcagctgaaagtggccaagtcgccataggtactccagcacacacaccttctaaagttgagttccatccacaatgagtc |
33401822 |
T |
|
| Q |
221 |
a |
221 |
Q |
| |
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| |
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|
| T |
33401823 |
a |
33401823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 6 - 228
Target Start/End: Original strand, 27688505 - 27688727
Alignment:
| Q |
6 |
cttccataatcctcttcacagctttttccagtgcatcccattgaacactatctccctccaatccaacccattttttaactccaacaggtacaccaatttt |
105 |
Q |
| |
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||||||||| |||||||||||| || |||| ||||||||||| |||| |||| || || |||||| |||||||||||||||||||||||| |||| |
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| T |
27688505 |
cttccataaccctcttcacagccttctccactgcatcccattcaacattatccccaaccttcataacccactttttaactccaacaggtacaccagtttt |
27688604 |
T |
|
| Q |
106 |
aagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtaccccagcaactacaccttctaaaactgaattc |
205 |
Q |
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|||||||||| | ||||||||||||||||||||||| || || || ||||||||||||| |||||||| ||||| || || ||||||||||| |||||| |
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| T |
27688605 |
aagtacctcagtgaccaacttctcattgtaaaattgctcggccgccacaggccaagtaatcataggtactccagctaccactccttctaaaaccgaattc |
27688704 |
T |
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| Q |
206 |
catccacaatgagtcacaaatgc |
228 |
Q |
| |
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||||| ||||| ||||||||||| |
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| T |
27688705 |
catccgcaatgcgtcacaaatgc |
27688727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 234
Target Start/End: Complemental strand, 18989693 - 18989535
Alignment:
| Q |
76 |
ttttttaactccaacaggtacaccaattttaagtacctcattcaccaacttctcattgtaaaattgttcagcagcaacaggccaagtaacgataggtacc |
175 |
Q |
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||||||| |||||||||||||||||||||||||||| ||| | |||||||||||||| ||||||| ||| ||| | ||||||||||| |||||||| |
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| T |
18989693 |
ttttttatctccaacaggtacaccaattttaagtacttcagttaccaacttctcattataaaattcctcaaaagctataggccaagtaatcataggtact |
18989594 |
T |
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| Q |
176 |
ccagcaactacaccttctaaaactgaattccatccacaatgagtcacaaatgctccaat |
234 |
Q |
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|||||| | |||| ||| ||| | | |||||||||||||||||||||||||||||||| |
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| T |
18989593 |
ccagcagccacactttccaaagttaagttccatccacaatgagtcacaaatgctccaat |
18989535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 237
Target Start/End: Original strand, 11646 - 11687
Alignment:
| Q |
196 |
aactgaattccatccacaatgagtcacaaatgctccaattga |
237 |
Q |
| |
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|||||||||||| ||||||||||||| |||||| |||||||| |
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| T |
11646 |
aactgaattccaaccacaatgagtcaaaaatgcaccaattga |
11687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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