View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971_low_14 (Length: 235)
Name: NF5971_low_14
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 11687624 - 11687401
Alignment:
| Q |
1 |
ttcgcagaggataatcgttttttattccctttacttttggtcatccattgatttgtattttaagaactctttacttcatttgtttacaagttcattttcc |
100 |
Q |
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| T |
11687624 |
ttcgcagcggataatcggtttttattccctttacttttggtcattcattgttttgtattttaagaactctttacttcatttgtttacaagttcattttcc |
11687525 |
T |
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| Q |
101 |
tacagtgtatatgattttgttctgtcagtaaatttatgttgcatatgttggaagttggactgagtttctta-gaaggaattaaaggcgatatgagctatt |
199 |
Q |
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| T |
11687524 |
tacagtgtatatgattttgttctgtcagtaaatttatgttgcatatgttggaagttggactgagtttcttatgaaggaattaaaggcgatatgagctatt |
11687425 |
T |
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| Q |
200 |
caatatttattgcaaggggatatt |
223 |
Q |
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|||||||||||||||||||||||| |
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| T |
11687424 |
caatatttattgcaaggggatatt |
11687401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 137 - 215
Target Start/End: Complemental strand, 11753134 - 11753055
Alignment:
| Q |
137 |
tgttgcatatgttggaagttggactgagtttctta-gaaggaattaaaggcgatatgagctattcaatatttattgcaag |
215 |
Q |
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| T |
11753134 |
tgttgcatatgttggaaattggactaaatttcttatgaaggaattaaaggtgatattagctattcaatatatattgcaag |
11753055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 70 - 180
Target Start/End: Complemental strand, 9313156 - 9313050
Alignment:
| Q |
70 |
tttacttcatttgtttacaagttcattttcctacagtgtatatgattttgttctgtcagtaaatttatgttgcatatgttggaagttggactgagtttct |
169 |
Q |
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| T |
9313156 |
tttacttcattagtttctaagttccttttcctacattgtataaga-----ttctgtcagtacatttatgttgcttatgtaggaagtgggactgagtttct |
9313062 |
T |
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| Q |
170 |
ta-gaaggaatt |
180 |
Q |
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| T |
9313061 |
tatgaaggaatt |
9313050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 11753242 - 11753178
Alignment:
| Q |
8 |
aggataatcgttttttattccctttacttttggtcatccattgatttgtattttaagaactcttt |
72 |
Q |
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|||||||||||||||||||| ||| | |||| ||||| ||||| ||| ||||||||||||||||| |
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| T |
11753242 |
aggataatcgttttttattcgcttcaatttttgtcattcattgttttatattttaagaactcttt |
11753178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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