View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971_low_18 (Length: 221)
Name: NF5971_low_18
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 34045659 - 34045841
Alignment:
| Q |
15 |
cataggttgttccgtgtaaggcatatttcttgtctaacattgctacttcctcctaatggaaccaccaccgaataatttaacacccatcaatatctcctat |
114 |
Q |
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| T |
34045659 |
cataggttgttccgtgtaaagcatatttcttgtctaacattgctacttcctcc---------caccaccgaataatttaacacccatcaatatcacctat |
34045749 |
T |
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| Q |
115 |
aatagcctatttctattttacttaaatttgtatgtatctcacattatccataatcttatacccaaaattgcctcttaacttgtgcatttatt |
206 |
Q |
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| T |
34045750 |
aatagcctatttctattttactttaatttgtatgtatctcacattatccataatcttatacccaaaattgcctcttaacttgtgcatttatt |
34045841 |
T |
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