View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971_low_3 (Length: 394)
Name: NF5971_low_3
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 382
Target Start/End: Original strand, 42526947 - 42527315
Alignment:
| Q |
17 |
acattttctagtgtaaacatatcttataaacaaatttgttgtttcaaaagtgttaatatatgtatctatgtcattttattgttagagtaaaagtaaagtt |
116 |
Q |
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| T |
42526947 |
acattttctagtgtaaacatatcttataaacaaatttgttgtttcaaaagtgttaatatatgtatctatgtcattttattgttagagtaaaagtaaagtt |
42527046 |
T |
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| Q |
117 |
tatgtgagtatgtgtacctatgtcannnnnnnn---agagtaaaagtaaagtttacgtgacttagactttggaggggttcaacaaggttaagacatgtgt |
213 |
Q |
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| T |
42527047 |
tatgtgagtatgtgtacctatgtcatttttttttttagagtaaaagtaaagtctacgtgagttaggctttggaggggttcacaaaggtcaagacatgtgt |
42527146 |
T |
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| Q |
214 |
taaggcacacaataaatggttatcgtggtactaacaaataatctattaaagatgttcttgtattatcgacggaagttgaactcgtaactttacgggtgag |
313 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42527147 |
taaggcacacaacgaatggttatcgtggtactaacaaataatctattaaaaatgtccttgtattatcgacggaagttgaactcgtaactttatgggtgag |
42527246 |
T |
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| Q |
314 |
tcaactccttaaacctacttccattagcgttcctatatgatagtagctacaatatgttgtttatatatt |
382 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42527247 |
tcaactccttaaacctactttcattagcgttcctatatgatagtagctacaatatgttgtttatatatt |
42527315 |
T |
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