View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5971_low_4 (Length: 377)
Name: NF5971_low_4
Description: NF5971
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5971_low_4 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 276
Target Start/End: Original strand, 45656549 - 45656822
Alignment:
| Q |
5 |
catcatgtgcaagaggacaagagatgatgatgggcttgttaggtggttcaagtatgaggaagggatttggaaacatgatgaagttagctctcttgcactt |
104 |
Q |
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| T |
45656549 |
catcatgtgtaagaggacaagagatgatgatgggcttgttaggtggttcaagtatgaggaagggatttggaaacatgatgaagttagctctcttgcactt |
45656648 |
T |
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| Q |
105 |
tgagaaaacaaaatatcgtattatatatgcatgcaataagctattacatcttatgtaatatttgcactttg--nnnnnnnngagatattgttttggcctt |
202 |
Q |
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| T |
45656649 |
tgagaaaacaaaatatcgtattttatatgcatgcaataagctattacatcttatgtaatatttgcactttgttaatcatttgagatattgttttggcctt |
45656748 |
T |
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| Q |
203 |
ataggcaaggaacaattttatcttatgtactgtatgttatttacctgagatattatgaacaaatatctttgttg |
276 |
Q |
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| T |
45656749 |
ataggcaaggaacaattttattttatgtactgtatgttatttacctgagatgttatgaacaaatatctttgttg |
45656822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 45656853 - 45656917
Alignment:
| Q |
307 |
agaattacttcatagatcttataatttaatttaaagtttggggttcaccatttattcttcttctc |
371 |
Q |
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| T |
45656853 |
agaattacttcatagatcttataatttaatttaaagtttcgggttcactatttattcttcttctc |
45656917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 110
Target Start/End: Complemental strand, 38483 - 38394
Alignment:
| Q |
21 |
acaagagatgatgatgggcttgttaggtggttcaagtatgaggaagggatttggaaacatgatgaagttagctctcttgcactttgagaa |
110 |
Q |
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| T |
38483 |
acaagagttgattgtgggcttcctaggtggtttaggtatgaggaagggatttggaaacatgatgaagttagctctcttgcactctgagaa |
38394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 105
Target Start/End: Complemental strand, 40947975 - 40947875
Alignment:
| Q |
5 |
catcatgtgcaagaggacaagagatgatgatgggcttgttaggtggttcaagtatgaggaagggatttggaaacatgatgaagttagctctcttgcactt |
104 |
Q |
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||||||||| ||||||||| || |||||||| ||| ||| ||||||| || ||||| |||||||||||| |||||||| | || |||||||||||| |
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| T |
40947975 |
catcatgtgtcagaggacaaaagcagatgatggacttcctagatggttcagatacgaggatgggatttggaaagatgatgaaataagttctcttgcactt |
40947876 |
T |
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| Q |
105 |
t |
105 |
Q |
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| T |
40947875 |
t |
40947875 |
T |
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