View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5972-Insertion-1 (Length: 1075)

Name: NF5972-Insertion-1
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5972-Insertion-1
NF5972-Insertion-1
[»] chr5 (24 HSPs)
chr5 (9-1038)||(8527736-8528810)
chr5 (248-921)||(8534438-8535122)
chr5 (246-762)||(1600713-1601241)
chr5 (735-927)||(8640449-8640644)
chr5 (606-728)||(9075167-9075289)
chr5 (49-158)||(8535183-8535294)
chr5 (391-670)||(8640663-8640948)
chr5 (836-929)||(9075303-9075398)
chr5 (589-928)||(8643506-8643847)
chr5 (589-731)||(8548785-8548929)
chr5 (812-926)||(8636090-8636206)
chr5 (741-799)||(2846187-2846245)
chr5 (741-799)||(2858008-2858066)
chr5 (49-202)||(8548409-8548562)
chr5 (855-926)||(9002283-9002356)
chr5 (66-155)||(9075019-9075109)
chr5 (844-928)||(8549058-8549145)
chr5 (738-782)||(2875609-2875653)
chr5 (819-878)||(8677342-8677401)
chr5 (589-639)||(9002563-9002613)
chr5 (9-41)||(8535333-8535365)
chr5 (589-652)||(8677547-8677610)
chr5 (590-676)||(8636299-8636385)
chr5 (53-122)||(1600601-1600670)
[»] chr4 (1 HSPs)
chr4 (9-941)||(9442011-9442971)
[»] chr1 (3 HSPs)
chr1 (624-879)||(26324320-26324584)
chr1 (796-890)||(5129826-5129920)
chr1 (545-670)||(5130051-5130177)
[»] chr7 (2 HSPs)
chr7 (399-679)||(48362330-48362618)
chr7 (740-935)||(48362640-48362837)
[»] chr8 (1 HSPs)
chr8 (790-843)||(44438409-44438462)
[»] chr6 (1 HSPs)
chr6 (693-762)||(16715510-16715579)


Alignment Details
Target: chr5 (Bit Score: 757; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 757; E-Value: 0
Query Start/End: Original strand, 9 - 1038
Target Start/End: Complemental strand, 8528810 - 8527736
Alignment:
Q  9 aatattgaggttctgaatatccactcaaggtaaaatttta----------------aatctgatggttgatgcttccttacaagtcatagtaattgattg 92  Q
    ||||||||||||||||||||||||||||||||||||||||                ||||||||||||||||||||||||||||||||||||||||||||    
T  8528810 aatattgaggttctgaatatccactcaaggtaaaattttatttttattggcaattgaatctgatggttgatgcttccttacaagtcatagtaattgattg 8528711  T
Q  93 taatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaaga 192  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528710 taatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaaga 8528611  T
Q  193 catgttgttaggttacttaggtagatatattcccacaacgacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatattt 292  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528610 catgttgttaggttacttaggtagatatattctcacaacgacatgttggagaaaggttgtcatgtttcgtcaatcatttgctttcacagctaatatattt 8528511  T
Q  293 atga---tgtatatatttgttataattttagttcttttctgttgtctaatatataccacc--taattacatctttggctttaatagttgatgggnnnnnn 387  Q
    ||||   ||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||          
T  8528510 atgatgttgtatatatttgttatatttttagttcttttctgttgtctaatatataccacctttaattacatctttggctttaatagttaatgggaaaaaa 8528411  T
Q  388 ntcacgtggatacaatcttttgttactaattacaacttataaattttctttatactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgta 487  Q
     ||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528410 atcatgtggacacaatcttttgttactaattacatcttataaattttctttatactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgta 8528311  T
Q  488 ttgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgcaatttacagttttagctactattacttaa- 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  8528310 ttgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgcaatttgcagttttagctactattacttaac 8528211  T
Q  587 ---------ccaatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagac 677  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528210 caatattccccaatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagac 8528111  T
Q  678 ttg-aagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggtgaagagcctgcttcctaaga 776  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8528110 ttgaaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggcgaagagcctgcttcctaaga 8528011  T
Q  777 agagtacgtctgctttcgtattgatttgtattttgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttatttt 876  Q
    |||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8528010 agagtacgtctgctttcgtattgattggtattctgacccctgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttatttt 8527911  T
Q  877 atataggtgtgc-aatctt-aattgcatgaagaaaatgaaggtcttgaatgatgttttgacttcttc--tcggt-gtga-gctttt-gtgaagagtacag 969  Q
    |||||||||||| ||| || |||||||||||||| |||||| |||||||||||||||||||||||||   |||| |||| |||||| |||||||||||||    
T  8527910 atataggtgtgcaaatattaaattgcatgaagaagatgaagatcttgaatgatgttttgacttcttcctccggtggtgaggcttttggtgaagagtacag 8527811  T
Q  970 ctgat----agagatttcataacacta-gcatggttattgtaaatcac-agttatgatttggctagttgtgattt 1038  Q
    |||||    ||  |||||   |||||| ||| ||||||  |||||||| ||||||||||||||||||||||||||    
T  8527810 ctgataagaaggaatttccatacactaggcagggttatgttaaatcacaagttatgatttggctagttgtgattt 8527736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 248 - 921
Target Start/End: Complemental strand, 8535122 - 8534438
Alignment:
Q  248 gttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatga---tgtatatatttgttataattttagttcttttctgttgtctaatatata 344  Q
    ||||| ||||||||||||||||||||||| ||| |||||||||||||||   ||| |||||||||||||| ||||||| |||||  || |||||||||||    
T  8535122 gttgtgatgtttcgtcaatcatttgcttttacaactaatatatttatgaagttgtttatatttgttataaatttagttattttccattatctaatatata 8535023  T
Q  345 ccacct--aattacatctttg--gctttaatagttgatgggnnnnnnntcacgtggatacaatcttttgttactaattacaacttataaattttctttat 440  Q
    ||||||  |||||||||||||  ||| | |||||| ||||        ||||||||| |||||||||| |||||||||||| ||||||| ||| ||||||    
T  8535022 ccacctttaattacatctttgtggctctgatagttaatggaaaaaaaatcacgtggacacaatcttttattactaattacatcttataactttcctttat 8534923  T
Q  441 actttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgag 540  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||||    
T  8534922 actttcgtgttgacggaggagaagaaaatgaatggacagttgttgtaatctcagttatttggatcttctttagttgctaggtagtaaatagtttcttgag 8534823  T
Q  541 gctgatccatcccctgcaatttacagttttagctactattacttaaccaa----------tattgttttaatttctataggtgtgcaaagtttaaattgc 630  Q
    |||||||||||||||| ||||| |||||||||||||||||||||||||||          |||||||||||||| |||||||||||||||||||||||||    
T  8534822 gctgatccatcccctgtaatttgcagttttagctactattacttaaccaatattccccaatattgttttaatttatataggtgtgcaaagtttaaattgc 8534723  T
Q  631 ggggagaaaaggaggttctttctctg---tctcaacagattgtttgagacttgaagttcatgcttttcatcatcttatagtgacttgataaatatatctt 727  Q
    ||| ||||||||| ||||||||| ||   ||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||     
T  8534722 gggaagaaaaggaagttctttctttgcgatctcaac-gattgtttgagacttgaagttcatgtttttcatcatcttatggtgacttgataaatatatctg 8534624  T
Q  728 cctccttatctgatggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattgatttgtattttgacccttgcttattaca 827  Q
    |||||||||||||            ||||||||| ||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||    
T  8534623 cctccttatctga------------tggtgaagaacctgcttcctaagaagagtacgtctgctttcgtattgattgttattctgacccttgcttattaca 8534536  T
Q  828 attttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtgtgcaa---tcttaa-ttgcatgaagaaaatgaaggtcttg 921  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||   | |||| ||||||||||||||||||| |||||    
T  8534535 attttaggtatgttacttagacttcgtcatgtaatattggtgttattttatataggtgttcaaattttttaatttgcatgaagaaaatgaagatcttg 8534438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 2e-67
Query Start/End: Original strand, 246 - 762
Target Start/End: Original strand, 1600713 - 1601241
Alignment:
Q  246 aggttgtcatgtttcgtcaatcatttgctttcacagctaatatatttatgatgt-------atatatttgttataattttagttcttttctgttgtctaa 338  Q
    ||||||| |||||||  |||||| ||||||| ||| |||||||||||||| |||       || | ||| |||||||| ||||| ||||  ||| |||||    
T  1600713 aggttgtgatgtttccgcaatcaattgcttttacaactaatatatttatggtgttgtttatattttttttttataattatagtttttttg-gttatctaa 1600811  T
Q  339 tatataccacct--aattacatctttggctttaatagttgatgggnnnnnnntcacgtggatacaatcttttgttactaattacaacttataaattttct 436  Q
    ||| ||||||||  |||||||| | ||||| | |||||| || ||       |||||||||  |||||||||||||||||||||| ||   |||||| ||    
T  1600812 tatctaccacctttaattacatatctggctctgatagttaataggaaaaaaatcacgtggacgcaatcttttgttactaattacatct---aaatttcct 1600908  T
Q  437 ttatactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttct 536  Q
     |||||||||||||||||||||| | ||||||||    ||||||||||||| |||| |||||||| |  ||||| |||||||| ||||||||| ||||||    
T  1600909 atatactttcgtgttgatggaggaggagaaaatg----gacagttgttgtaatgtcagttatttgaacgttctt-agttgctaagtagtaaattgtttct 1601003  T
Q  537 tgaggctgatccatcccctgcaatttacagttttagctactattacttaacc----------aatattgttttaatttctataggtgtgcaaagtttaaa 626  Q
    | ||  |  ||||||||||||||||| |||||||||||| ||||||||||||          |||||||||||||||| |||||||||||||||||||||    
T  1601004 taagtgtattccatcccctgcaatttgcagttttagctaatattacttaaccattattcccaaatattgttttaatttatataggtgtgcaaagtttaaa 1601103  T
Q  627 ttgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagactt--gaagttcatgcttttcatcatcttatagtgacttgataaatatat 724  Q
    ||||||| ||||| ||| | ||| ||||||||||||| || ||||| ||||||   || | |||| ||| ||||||||| | ||||||||| |||| |||    
T  1601104 ttgcgggaagaaacggaaggtctatctctgtctcaactgactgtttaagacttagaaactacatgttttccatcatcttttggtgacttgaaaaatttat 1601203  T
Q  725 cttcctccttatctgatggtgaagagtttggtgaagag 762  Q
    |||| ||||  |||||||||||||| ||||||||||||    
T  1601204 cttcatcctcgtctgatggtgaagaatttggtgaagag 1601241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 735 - 927
Target Start/End: Complemental strand, 8640644 - 8640449
Alignment:
Q  735 atctgatggtgaa-gagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattgatttgtattttgacccttgcttattacaatttta 833  Q
    ||||||||||||| || ||||||||||  || ||||  |||||||||||||| |  ||| | |||||||||||||||||||| |||||| ||||||||||    
T  8640644 atctgatggtgaatgattttggtgaaggacccgcttgttaagaagagtacgtttatttttgcattgatttgtattttgacccctgcttactacaatttta 8640545  T
Q  834 ggtatgttacttagactttgttatgtaatattggtgttattttatataggtgtgc--aatcttaattgcatgaagaaaatgaaggtcttgaatgat 927  Q
    || | |||||||||||||||||  |||  ||||||||||||||||||||||||||  ||| | |||||| |||||||||||||| |||||||||||    
T  8640544 ggcacgttacttagactttgtttcgtaccattggtgttattttatataggtgtgcaaaatttaaattgcgtgaagaaaatgaagatcttgaatgat 8640449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 606 - 728
Target Start/End: Original strand, 9075167 - 9075289
Alignment:
Q  606 tataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagacttgaagttcatgcttttcatcatcttat 705  Q
    |||||||||||||||||||||||||||| ||||| ||| ||||||||||||| |||| |||||||||||||||| ||||  ||| ||||||||||||||     
T  9075167 tataggtgtgcaaagtttaaattgcgggaagaaagggacgttctttctctgtttcaagagattgtttgagacttaaagtatatgtttttcatcatcttac 9075266  T
Q  706 agtgacttgataaatatatcttc 728  Q
     ||||||||||||||| ||||||    
T  9075267 ggtgacttgataaataaatcttc 9075289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 49 - 158
Target Start/End: Complemental strand, 8535294 - 8535183
Alignment:
Q  49 aatctgatggttgatgcttccttacaa-gtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cactt 146  Q
    |||||||||||||||||| |||||||| |||||||||||||||| ||||||| || |||||||||||||| |||| |||||||||||||||||| || ||    
T  8535294 aatctgatggttgatgctcccttacaaagtcatagtaattgattttaatcataagacgagtattcaaaggaacttctgtaagtttcctatgttaccagtt 8535195  T
Q  147 atattttaaact 158  Q
    ||||||||||||    
T  8535194 atattttaaact 8535183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 391 - 670
Target Start/End: Complemental strand, 8640948 - 8640663
Alignment:
Q  391 acgtggatacaatcttttgttactaattacaacttataaattttctttatactttcg-tgttgatggaggtgtagaaaatgaatggacagttgttgtatt 489  Q
    ||||||| ||||||||| ||||||||| ||| ||||||||||| ||||||||||||  ||||||  | || | | |||||| ||    |||||||||| |    
T  8640948 acgtggacacaatctttcgttactaatgacatcttataaatttcctttatactttccatgttgacagcggaggataaaatggat----agttgttgtaat 8640853  T
Q  490 gtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgcaatttacagttttagctactattacttaacca 589  Q
     || ||| | ||||||| ||| ||||| || ||||||||| |||| |  || ||  ||||||| ||||||||| |||||||||||| |||||||||||||    
T  8640852 ttcagttttatggatctgcttaagttgttaagtagtaaat-gtttttcaagactattccatcctctgcaattttcagttttagctaatattacttaacca 8640754  T
Q  590 ----------atattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgt 670  Q
              ||||||||||||||| |||||||||||||||||||||||| | | |||||| || ||| ||||  ||||||||| ||||||    
T  8640753 ttgttccctaatattgttttaatttatataggtgtgcaaagtttaaattgggagaagaaaatgaagttttttccttgtctcaacggattgt 8640663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 836 - 929
Target Start/End: Original strand, 9075303 - 9075398
Alignment:
Q  836 tatgttacttagactttgttatgtaatattggtgttattttatataggtgtgcaa--tcttaattgcatgaagaaaatgaaggtcttgaatgatgt 929  Q
    |||||||||||||||||||| ||||||| || |||||||||||||||||||||||  | | ||||||||||||| ||||||| |||||||||||||    
T  9075303 tatgttacttagactttgttgtgtaatactgttgttattttatataggtgtgcaaattttaaattgcatgaagagaatgaagatcttgaatgatgt 9075398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 589 - 928
Target Start/End: Complemental strand, 8643847 - 8643506
Alignment:
Q  589 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagacttgaagtt-ca 687  Q
    |||||||||||||||  ||||||||||||||  | ||||||   | |||||| || ||||||||  |||| |||||  || ||||||| ||| | || ||    
T  8643847 aatattgttttaattgatataggtgtgcaaatgtcaaattggaagaagaaaatgaagttctttccttgtcacaacaagttctttgagatttggaattaca 8643748  T
Q  688 tgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtct 787  Q
     | | ||||||||||||| |||||||||| ||||||| ||||||     ||||||||||||| || | ||| |||||||  |  || ||| |||||||||    
T  8643747 cgttcttcatcatcttatggtgacttgattaatatattttcctcagc--ctgatggtgaagaattcgatgatgagcctgtatattatgaaaagtacgtct 8643650  T
Q  788 gctttcgtattgatttg--tattttgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtg 885  Q
      ||||  ||||||  |  |||| |||||||||| || |||||||||||| |  |||||||| || | || |||||||||||||||||||||||||||||    
T  8643649 cttttcacattgatgaggatattctgacccttgcatactacaattttaggcac-ttacttaggctcttttttgtaatattggtgttattttatataggtg 8643551  T
Q  886 tgcaa--tcttaattgcatgaagaaaatgaaggtcttgaatgatg 928  Q
    |||||  | | ||||  ||||| ||||||||| ||||||||||||    
T  8643550 tgcaaattttaaattatatgaaaaaaatgaagatcttgaatgatg 8643506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 589 - 731
Target Start/End: Original strand, 8548785 - 8548929
Alignment:
Q  589 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagacttgaagttcat 688  Q
    |||||||||||||||| |||||||||| |||||||||||| | || |||||| || ||| ||||  |||||||||||||||||||||||||||    |||    
T  8548785 aatattgttttaatttatataggtgtgtaaagtttaaatttcaggaagaaaaagaagttatttcgttgtctcaacagattgtttgagacttgacacacat 8548884  T
Q  689 g--cttttcatcatcttatagtgacttgataaatatatcttcctc 731  Q
    |   | ||||| | ||||| ||||| |||||||||||||||||||    
T  8548885 ggattcttcattaccttatggtgacatgataaatatatcttcctc 8548929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 812 - 926
Target Start/End: Complemental strand, 8636206 - 8636090
Alignment:
Q  812 acccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtgtgcaa--tcttaattgcatgaagaaa 909  Q
    ||||||||||| ||||||||||||||  ||||| || || ||||| |||||||||| |||||||||||||||| |||||  | | ||||   ||||||||    
T  8636206 acccttgcttaatacaattttaggtacattactaaggctctgttacgtaatattggcgttattttatataggtatgcaaattttaaattaagtgaagaaa 8636107  T
Q  910 atgaaggtcttgaatga 926  Q
    |||||| ||||||||||    
T  8636106 atgaagatcttgaatga 8636090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 741 - 799
Target Start/End: Original strand, 2846187 - 2846245
Alignment:
Q  741 tggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattg 799  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| || ||||| ||||    
T  2846187 tggtgaagaatttggtgaagagcctgcttcctaataagagtacgtttgttttcgcattg 2846245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 741 - 799
Target Start/End: Original strand, 2858008 - 2858066
Alignment:
Q  741 tggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattg 799  Q
    ||||||||| |||||||||||||||||||||||| |||||||||| || ||||| ||||    
T  2858008 tggtgaagaatttggtgaagagcctgcttcctaataagagtacgtttgttttcgcattg 2858066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 202
Target Start/End: Original strand, 8548409 - 8548562
Alignment:
Q  49 aatctgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttac-actta 147  Q
    |||||||||||||||||| || || || ||||||||||| ||| ||||||| ||  |||||||||||||| | ||||| | |||  | ||||||  ||||    
T  8548409 aatctgatggttgatgctcccataaaaatcatagtaattaattttaatcataagatgagtattcaaagggtcatgtgtgaattttttgtgttactgctta 8548508  T
Q  148 tattttaaacttactatttttccattccatttggagaaaagaagacatgttgtta 202  Q
    || ||||||||| |||||||  ||||| ||||||| ||| |||| | ||||||||    
T  8548509 ta-tttaaacttcctattttggcattctatttggataaaggaaggcttgttgtta 8548562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 855 - 926
Target Start/End: Complemental strand, 9002356 - 9002283
Alignment:
Q  855 tatgtaatattggtgttattttatataggtgtgcaa--tcttaattgcatgaagaaaatgaaggtcttgaatga 926  Q
    ||||||||||||||||| |||| |||||||||||||  | | |||||| |||||||||||||| ||||||||||    
T  9002356 tatgtaatattggtgttgttttgtataggtgtgcaaagtttaaattgcgtgaagaaaatgaagatcttgaatga 9002283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 9075019 - 9075109
Alignment:
Q  66 ttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgtta-cacttatattttaa 155  Q
    |||| ||||||||||||||||| ||| ||||||| ||  |||| |||||||||||| | || |||||| ||||||| ||||||||||||||    
T  9075019 ttccgtacaagtcatagtaattaattttaatcataagatgagttttcaaagggactcgagtgagtttcttatgttaccacttatattttaa 9075109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 844 - 928
Target Start/End: Original strand, 8549058 - 8549145
Alignment:
Q  844 ttagactttgttatgtaatattggtgttattttatataggtgtgcaatctt---aattgcatgaagaaaatgaaggtcttgaatgatg 928  Q
    |||| |||||||||||||||||||||||||||| |||||| ||||||  ||   |||||||| |||||||  ||| ||||||||||||    
T  8549058 ttagcctttgttatgtaatattggtgttattttgtataggcgtgcaaagtttaaaattgcataaagaaaacaaagatcttgaatgatg 8549145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 738 - 782
Target Start/End: Original strand, 2875609 - 2875653
Alignment:
Q  738 tgatggtgaagagtttggtgaagagcctgcttcctaagaagagta 782  Q
    |||||||||||| |||||||||||||||||||||||| |||||||    
T  2875609 tgatggtgaagaatttggtgaagagcctgcttcctaataagagta 2875653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 819 - 878
Target Start/End: Complemental strand, 8677401 - 8677342
Alignment:
Q  819 cttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttat 878  Q
    |||| |||||||||||| ||||||||| | || |||| ||||||||||||||||||||||    
T  8677401 cttactacaattttaggaatgttacttgggctctgttttgtaatattggtgttattttat 8677342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 589 - 639
Target Start/End: Complemental strand, 9002613 - 9002563
Alignment:
Q  589 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaa 639  Q
    ||||||||| |||||| |||||||||||||||||||||||| ||| |||||    
T  9002613 aatattgttgtaatttatataggtgtgcaaagtttaaattgagggaagaaa 9002563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 8535365 - 8535333
Alignment:
Q  9 aatattgaggttctgaatatccactcaaggtaa 41  Q
    |||||||||||||||||||||||||||||||||    
T  8535365 aatattgaggttctgaatatccactcaaggtaa 8535333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 589 - 652
Target Start/End: Complemental strand, 8677610 - 8677547
Alignment:
Q  589 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttc 652  Q
    |||||||||||||||  ||||||||||||||  || ||||||||| |||||| || ||||||||    
T  8677610 aatattgttttaattgatataggtgtgcaaatgttgaattgcgggaagaaaatgaagttctttc 8677547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 590 - 676
Target Start/End: Complemental strand, 8636385 - 8636299
Alignment:
Q  590 atattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgaga 676  Q
    |||||||||| |||  ||||||||||||||  || |||||| || |||||| || ||||||||  |||||||||| | |||||||||    
T  8636385 atattgttttgattgatataggtgtgcaaatgttgaattgccggaagaaaatgaagttctttccttgtctcaacaaactgtttgaga 8636299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 1600601 - 1600670
Alignment:
Q  53 tgatggttgatgcttccttacaagtcatagtaattgattgtaatcatgagtcgagtattcaaagggactt 122  Q
    ||||||| |||| | || ||||||||||||||||| ||| ||||||| || | ||| |||||||||||||    
T  1600601 tgatggtcgatgttcccatacaagtcatagtaattaattttaatcataagacaagttttcaaagggactt 1600670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 9 - 941
Target Start/End: Complemental strand, 9442971 - 9442011
Alignment:
Q  9 aatattgaggttctgaatatccactcaaggtaaaatttta----------------aatctgatggttgatgcttccttacaagtcatagtaattgattg 92  Q
    ||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||||| |||||||||||||||||||||||    
T  9442971 aatattgaggttctgaatatccactcaaggtaaaattttatttttattggcaattgaatctgatggttgatgcttctttacaagtcatagtaattgattg 9442872  T
Q  93 taatcatgagtcgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactatttttccattccatttggagaaaagaaga 192  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |    
T  9442871 taatcatgagatgagtattcaaagggacttgtgtaagtttcctatgttacacttatattttaaacttactattttgccattccatttggagaaaagaaaa 9442772  T
Q  193 catgttgttaggttacttaggtagatatattcccacaacgacatgttggaga-----------aaggttgtcatgtttcgtcaatcatttgctttcacag 281  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||||||||           |||||||| |||||||||||||||||||||||| |||    
T  9442771 catgttgttaggttacttcggttgatatattctcacaacgacatgttggagacatgttggagaaaggttgtgatgtttcgtcaatcatttgctttcgcag 9442672  T
Q  282 ctaatatatttatgatgt---atatatttgttataattttagttcttttctgttgtctaatatataccacct--aattacatctttggctttaatagttg 376  Q
    ||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||     
T  9442671 ctaatatatttatgatgttgtatatatttgttatatttttagttcttttctgttgtctaatatataccacctttaattacatctttggctttaatagtta 9442572  T
Q  377 atgggnnnnnnntcacgtggatacaatcttttgttactaattacaacttataaattttctttatactttcgtgttgatggaggtgtagaaaatgaatgga 476  Q
    |||||       ||||||||| ||||||||||||||||||||||| |||||||||||||           ||||||||||||| ||||||||||||||||    
T  9442571 atgggaaaaaaatcacgtggacacaatcttttgttactaattacatcttataaattttc-----------gtgttgatggaggcgtagaaaatgaatgga 9442483  T
Q  477 cagttgttgtattgtcggttatttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgcaatttacagttttagctac 576  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9442482 cagttgttgtattgtcggttatttggatcttctttagttgctatgtagtaaatagtttcttgaggctgatccatcccctgcaatttgcagttttagctac 9442383  T
Q  577 tattacttaaccaatatt----------gttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacaga 666  Q
    ||||| ||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  9442382 tattaattaaccaatattcctcaatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaa---- 9442287  T
Q  667 ttgtttgagacttgaa-gttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggtgaagagcct 765  Q
      |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9442286 --gtttgagatttgaaagttcatgcttttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggtgaagagcct 9442189  T
Q  766 gcttcctaagaagagtacgtctgctttcgtattgatttgtattttgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatatt 865  Q
    ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9442188 gcttcctaagaagagtacgtctgctttcgtattgattggtattctgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatatt 9442089  T
Q  866 ggtgttattttatataggtgtgc-aatctt-aattgcatgaagaaaatgaaggtcttgaatgatgttttgacttcttc 941  Q
    ||||||||||||||||||||||| ||| || |||| |||||||||||||||| |||||||||||||||||||||||||    
T  9442088 ggtgttattttatataggtgtgcaaatattaaattacatgaagaaaatgaagatcttgaatgatgttttgacttcttc 9442011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 624 - 879
Target Start/End: Original strand, 26324320 - 26324584
Alignment:
Q  624 aaattgcggggagaaaaggaggttctttctctgtctcaac-------agattgtttgagacttgaa-gttcatgcttttcatcatcttatagtgacttga 715  Q
    |||||||||| ||||||||| |||||||||||||||||||       ||||| ||||||||||||| ||||||||||||||||||||||| |||||||||    
T  26324320 aaattgcgggaagaaaaggaagttctttctctgtctcaactctcaacagattttttgagacttgaaagttcatgcttttcatcatcttatggtgacttga 26324419  T
Q  716 taaatatatcttcctccttatctgatggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcgtattgatttgtattttgaccc 815  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| ||||| ||||||    
T  26324420 taaatatatcttcctccttatctgatggtgaagagtttggtgaagagccggcttccaaagaagagtacgtctgttttcgtattgattggtattctgaccc 26324519  T
Q  816 ttgcttattacaattttaggtatgtt-acttagactttgttatgtaatattggtgttattttata 879  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26324520 ttgcttattacaattttaggtatgttaacttagactttgttatgtaatattggtgttattttata 26324584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 796 - 890
Target Start/End: Complemental strand, 5129920 - 5129826
Alignment:
Q  796 attgatttgtattttgacccttgcttattacaattttaggtatgttacttagactttgttatgtaatattggtgttattttatataggtgtgcaa 890  Q
    ||||||| ||||| |||| | |||||| |||||||||||| |  ||| |||| | |||||| ||||||||||| |||||||||||||||||||||    
T  5129920 attgattggtattctgactcctgcttagtacaattttaggcacattatttaggccttgttacgtaatattggtcttattttatataggtgtgcaa 5129826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 545 - 670
Target Start/End: Complemental strand, 5130177 - 5130051
Alignment:
Q  545 atccatcccctgcaatttacagttttagctactattacttaaccaatattgtt-ttaatttctataggtgtgcaaagtttaaattgcggggagaaaagga 643  Q
    |||| |||||||||| || |||||||||||| |||||| |||  | | || || || |||| || ||||||||||||||||||||||||| |||||| ||    
T  5130177 atccctcccctgcaaattgcagttttagctagtattacataaatattgtttttatttatttatacaggtgtgcaaagtttaaattgcgggaagaaaatga 5130078  T
Q  644 ggttctttctctgtctcaacagattgt 670  Q
     ||| ||||  |||| |||||||||||    
T  5130077 agttttttccttgtcccaacagattgt 5130051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 2e-58; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 2e-58
Query Start/End: Original strand, 399 - 679
Target Start/End: Original strand, 48362330 - 48362618
Alignment:
Q  399 acaatcttttgttactaattacaacttataaattttctttatactttcgtgttgatggaggtgtagaaaatgaatggacagttgttgtattgtcggttat 498  Q
    |||||| || ||||| ||||||| ||||||||||| |||||||||||||||||||||||||   |||||||||||||  |||||||||| |||| |||||    
T  48362330 acaatccttcgttaccaattacatcttataaatttcctttatactttcgtgttgatggaggacgagaaaatgaatgggaagttgttgtaatgtcagttat 48362429  T
Q  499 ttggatcttctttagttgctaggtagtaaatagtttcttgaggctgatccatcccctgcaatttacagttttagctactattacttaacc---------- 588  Q
    ||||| |||| ||||||| ||  ||||||||||||| | ||| ||  ||||||| ||||||||| |||||||||||| ||||||||||||              
T  48362430 ttggaccttc-ttagttggtaattagtaaatagttt-tcgagactattccatcctctgcaatttgcagttttagctaatattacttaaccattattcctg 48362527  T
Q  589 aatattgttttaatttctataggtgtgcaaagtttaaattgcggggagaaaaggaggttctttctctgtctcaacagattgtttgagactt 679  Q
    ||||||| |||||||| ||||||||||||||||||||||||| || ||||||||| | | | |||||||||||||||||||||||||||||    
T  48362528 aatattggtttaatttatataggtgtgcaaagtttaaattgcaggaagaaaaggaaggtatatctctgtctcaacagattgtttgagactt 48362618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 91; E-Value: 2e-43
Query Start/End: Original strand, 740 - 935
Target Start/End: Original strand, 48362640 - 48362837
Alignment:
Q  740 atggtgaagagtttggtgaagagcctgcttcctaagaagagtacgtctgctttcg-tattgatttgtattttgacccttgcttattacaattttaggtat 838  Q
    |||||||||| ||||||||||||||  |||||||||||||||||||||| ||||| | |||||| || || |||||| ||| |||||||||||||| |||    
T  48362640 atggtgaagaatttggtgaagagccctcttcctaagaagagtacgtctgttttcgcttttgattggttttctgacccctgcgtattacaattttagttat 48362739  T
Q  839 gttacttagactttgttatgtaatattggtgttattttatataggtgtgc-aatctt-aattgcatgaagaaaatgaaggtcttgaatgatgttttgac 935  Q
    |||||| ||||| |||||||||||||| |||||| ||||||||||||||| ||| || |||| |||||||||||||||| ||| |||||||| ||||||    
T  48362740 gttactaagactatgttatgtaatattcgtgtta-tttatataggtgtgcaaatattaaattacatgaagaaaatgaagatctcgaatgatggtttgac 48362837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 790 - 843
Target Start/End: Original strand, 44438409 - 44438462
Alignment:
Q  790 tttcgtattgatttgtattttgacccttgcttattacaattttaggtatgttac 843  Q
    ||||| ||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  44438409 tttcgcattgatcggtattttgacccttgcttactacaattttaggtatgttac 44438462  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 693 - 762
Target Start/End: Complemental strand, 16715579 - 16715510
Alignment:
Q  693 ttcatcatcttatagtgacttgataaatatatcttcctccttatctgatggtgaagagtttggtgaagag 762  Q
    ||||| |||||||  |||||||||||||||||||||||| | ||| || |||||||| || | |||||||    
T  16715579 ttcattatcttatgttgacttgataaatatatcttcctcttcatccgacggtgaagaattcgatgaagag 16715510  T

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