View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5972-Insertion-11 (Length: 365)

Name: NF5972-Insertion-11
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5972-Insertion-11
NF5972-Insertion-11
[»] chr1 (4 HSPs)
chr1 (171-365)||(31067894-31068088)
chr1 (176-361)||(31059230-31059408)
chr1 (36-122)||(31067759-31067838)
chr1 (41-70)||(31059190-31059219)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 171 - 365
Target Start/End: Original strand, 31067894 - 31068088
Alignment:
Q  171 gaaccagtcttattcattaatattgcatcactaatataatatagctgggtagctagttatcctatttttggcattcgagtgactctcccatgtttgtcga 270  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31067894 gaaccagtcttatttattaatattgcatcactaatataatatagctgggtagctagttatcctatttttggcattcgagtgactctcccatgtttgtcga 31067993  T
Q  271 cccaaacccaaaccctagtgcacttgaaatccattgtcacaacagacccttctggcaccactattgcattcactttctcattctctctttctatc 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31067994 cccaaacccaaaccctagtgcacttgaaatccattgtcacaacagacccttctggcaccactattgcattcactttctcattctctctttctatc 31068088  T

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Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 176 - 361
Target Start/End: Original strand, 31059230 - 31059408
Alignment:
Q  176 agtcttattcattaatattgcatcactaatataatatagctgggtagctagttatcctatttttggcattcgagtgactctcccatgtttgtcgacccaa 275  Q
    |||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| ||||  |||| |||| | |||||||||||||    
T  31059230 agtcttattcattaatattgcatcactaata-------gctgggtagctagttatcctatttttggcactcgaaagactttcccttctttgtcgacccaa 31059322  T
Q  276 acccaaaccctagtgcacttgaaatccattgtcacaacagacccttctggcaccactattgcattcactttctcattctctctttc 361  Q
    ||||||||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||||| | | ||||||||||||    
T  31059323 acccaaaccctagtgcacttgaaattcattggcacaagagacccttccggcaccactattgcattcactctatgattctctctttc 31059408  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 122
Target Start/End: Original strand, 31067759 - 31067838
Alignment:
Q  36 tggaagacattgataatgatcatttttgctagctactagctagccacccccatagttttaaactgggcactatgttacatgatacat 122  Q
    ||||||||||||||||||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||||||    
T  31067759 tggaagacattgataatgatcatttttgctagcca-------gccacccccatagttttaaactgggcactatgttacatgatacat 31067838  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 70
Target Start/End: Original strand, 31059190 - 31059219
Alignment:
Q  41 gacattgataatgatcatttttgctagcta 70  Q
    ||||||||||||||||||||||||||||||    
T  31059190 gacattgataatgatcatttttgctagcta 31059219  T

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