View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5972-Insertion-14 (Length: 147)

Name: NF5972-Insertion-14
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5972-Insertion-14
NF5972-Insertion-14
[»] chr7 (5 HSPs)
chr7 (16-147)||(37362433-37362564)
chr7 (24-66)||(7841406-7841448)
chr7 (93-147)||(7841452-7841505)
chr7 (103-147)||(1971308-1971352)
chr7 (9-66)||(1971193-1971248)
[»] chr3 (8 HSPs)
chr3 (16-147)||(53689349-53689480)
chr3 (9-139)||(52311493-52311625)
chr3 (9-85)||(14459163-14459239)
chr3 (9-61)||(12812825-12812877)
chr3 (16-83)||(25489586-25489653)
chr3 (23-84)||(45458391-45458452)
chr3 (103-147)||(52130972-52131016)
chr3 (9-60)||(52130893-52130943)
[»] chr1 (4 HSPs)
chr1 (16-85)||(50290541-50290610)
chr1 (16-85)||(40981489-40981558)
chr1 (103-147)||(7607909-7607953)
chr1 (103-147)||(31770897-31770941)
[»] chr4 (17 HSPs)
chr4 (9-85)||(14209363-14209439)
chr4 (9-85)||(14210314-14210390)
chr4 (9-85)||(14211283-14211359)
chr4 (9-85)||(14212234-14212310)
chr4 (9-85)||(14214171-14214247)
chr4 (9-85)||(14215140-14215216)
chr4 (9-85)||(14216109-14216185)
chr4 (9-85)||(14217060-14217136)
chr4 (9-85)||(14218011-14218087)
chr4 (9-85)||(14219950-14220026)
chr4 (9-85)||(14220901-14220977)
chr4 (9-85)||(14221870-14221946)
chr4 (9-85)||(14222839-14222915)
chr4 (9-85)||(14213203-14213279)
chr4 (9-85)||(14218981-14219057)
chr4 (103-147)||(41810374-41810418)
chr4 (9-60)||(41810275-41810326)
[»] chr2 (1 HSPs)
chr2 (9-85)||(31409599-31409675)
[»] chr8 (2 HSPs)
chr8 (23-61)||(29729269-29729307)
chr8 (18-50)||(19962172-19962204)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 1e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 16 - 147
Target Start/End: Complemental strand, 37362564 - 37362433
Alignment:
Q  16 ggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaacctcttcttctccattgtttgttcaataccg 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||| |    
T  37362564 ggttagcacatcagccgttgatcaaatctcactccttgaaaattgacacacgcgcatagggaaacaaaacctcttcttctccattatttgttcaatactg 37362465  T
Q  116 atgcaaactctacagaaccccatgcttccctc 147  Q
    |||||||||||||||| |||||||||||||||    
T  37362464 atgcaaactctacagagccccatgcttccctc 37362433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 7841406 - 7841448
Alignment:
Q  24 catcagccgttgatcaaatctcactccttgaaaattgacacac 66  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  7841406 catcagccgttgatcaaatctcactccttgaaaattgaaacac 7841448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 93 - 147
Target Start/End: Original strand, 7841452 - 7841505
Alignment:
Q  93 tctccattgtttgttcaataccgatgcaaactctacagaaccccatgcttccctc 147  Q
    ||||| || ||||||||||||| ||||||||||||||||||||||||||||||||    
T  7841452 tctcctttatttgttcaatacc-atgcaaactctacagaaccccatgcttccctc 7841505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 1971308 - 1971352
Alignment:
Q  103 ttgttcaataccgatgcaaactctacagaaccccatgcttccctc 147  Q
    |||||||||||| |||||||||||||||| |||||||||||||||    
T  1971308 ttgttcaataccaatgcaaactctacagagccccatgcttccctc 1971352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 1971193 - 1971248
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacac 66  Q
    |||||| |||||| |||||||||||||||||||  |||||| ||||||||||| ||||    
T  1971193 taggggaggttagcacatcagccgttgatcaaa--tcactctttgaaaattgatacac 1971248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 96; Significance: 2e-47; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 53689349 - 53689480
Alignment:
Q  16 ggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaacctcttcttctccattgtttgttcaataccg 115  Q
    |||||| ||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||| ||| ||||||||||||||    
T  53689349 ggttagcacatcagccattgatcaaatctcactccttgaaaattaacacacgcgcatagggaaacaaaaccccttcttctctattatttgttcaataccg 53689448  T
Q  116 atgcaaactctacagaaccccatgcttccctc 147  Q
    |||||||||||||||| |||||||||||||||    
T  53689449 atgcaaactctacagagccccatgcttccctc 53689480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 7e-44
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 52311625 - 52311493
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacata--gggaaacaaaacctcttcttctccattgtttgt 106  Q
    |||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||  | ||||  ||||||||||||||||||||||||||| |||||    
T  52311625 taggggaggttagcacatcagtcgttgatcaaatctcactccttgaaaattgacacatgcgcatatggggaaacaaaacctcttcttctccattatttgt 52311526  T
Q  107 tcaataccgatgcaaactctacagaaccccatg 139  Q
    ||||||||||||||||||||||||| |||||||    
T  52311525 tcaataccgatgcaaactctacagagccccatg 52311493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14459239 - 14459163
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||||||||||| ||||   ||||||||||||||||    
T  14459239 taggggaggttagcacatcagtcgttgatcaaatctcactccttgaaaattgatacacgagcatagggaaacaaaac 14459163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 12812877 - 12812825
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattga 61  Q
    |||||| |||||| ||||||||||||||||||||||||||| |||||||||||    
T  12812877 taggggaggttagcacatcagccgttgatcaaatctcactcattgaaaattga 12812825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 25489586 - 25489653
Alignment:
Q  16 ggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaa 83  Q
    ||||||||||||||||||| ||||||||||||| ||| |||||||| ||||   ||||||||||||||    
T  25489586 ggttagtacatcagccgtttatcaaatctcacttcttaaaaattgaaacacgtgcatagggaaacaaa 25489653  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 45458452 - 45458391
Alignment:
Q  23 acatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaa 84  Q
    |||| |||| ||||||||||||||||||||||||||||| |||| ||| |||| ||||||||    
T  45458452 acatgagcccttgatcaaatctcactccttgaaaattgaaacacacacgtaggaaaacaaaa 45458391  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 52130972 - 52131016
Alignment:
Q  103 ttgttcaataccgatgcaaactctacagaaccccatgcttccctc 147  Q
    ||||||||||||||||||||||||||||  |||||||||||||||    
T  52130972 ttgttcaataccgatgcaaactctacagtgccccatgcttccctc 52131016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 52130893 - 52130943
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattg 60  Q
    |||||| |||||| |||||| || |||||||||||||||| |||||||||||    
T  52130893 taggggaggttagcacatcaaccattgatcaaatctcact-cttgaaaattg 52130943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 50290541 - 50290610
Alignment:
Q  16 ggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||||| | || | ||||||||||||||||    
T  50290541 ggttagcacatcagtcgttgataaaatctcactccttgaaaattgatagacgctcatagggaaacaaaac 50290610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 40981558 - 40981489
Alignment:
Q  16 ggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| || |||||||||||||||| ||||||| || |||||||| |||| | ||||||||||| ||||    
T  40981558 ggttagcacttcagccgttgatcaaaactcactctttaaaaattgatacacgcgcatagggaaaccaaac 40981489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 7607953 - 7607909
Alignment:
Q  103 ttgttcaataccgatgcaaactctacagaaccccatgcttccctc 147  Q
    |||||||||||| |||||||||||||||  |||||||||||||||    
T  7607953 ttgttcaatacccatgcaaactctacagtgccccatgcttccctc 7607909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 31770941 - 31770897
Alignment:
Q  103 ttgttcaataccgatgcaaactctacagaaccccatgcttccctc 147  Q
    |||||||||||| |||||||||||||||  |||||||||||||||    
T  31770941 ttgttcaatacccatgcaaactctacagtgccccatgcttccctc 31770897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14209439 - 14209363
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14209439 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14209363  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14210390 - 14210314
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14210390 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14210314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14211359 - 14211283
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14211359 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14211283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14212310 - 14212234
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14212310 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14212234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14214247 - 14214171
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14214247 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14214171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14215216 - 14215140
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14215216 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14215140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14216185 - 14216109
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14216185 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14216109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14217136 - 14217060
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14217136 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14217060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14218087 - 14218011
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14218087 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14218011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14220026 - 14219950
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14220026 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14219950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14220977 - 14220901
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14220977 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14220901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14221946 - 14221870
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14221946 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14221870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14222915 - 14222839
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  14222915 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 14222839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14213279 - 14213203
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||  | |||||| |||||||||    
T  14213279 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacatgcgcataggaaaacaaaac 14213203  T

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Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 14219057 - 14218981
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||  | |||||| |||||||||    
T  14219057 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacatgcgcataggaaaacaaaac 14218981  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 41810374 - 41810418
Alignment:
Q  103 ttgttcaataccgatgcaaactctacagaaccccatgcttccctc 147  Q
    |||||||||||| |||||||||||||||  |||||||||||||||    
T  41810374 ttgttcaatacccatgcaaactctacagtgccccatgcttccctc 41810418  T

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Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 60
Target Start/End: Original strand, 41810275 - 41810326
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattg 60  Q
    |||||| |||||| | |||| || ||||||||||||||||||||||||||||    
T  41810275 taggggcggttagcatatcaaccattgatcaaatctcactccttgaaaattg 41810326  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 31409675 - 31409599
Alignment:
Q  9 taggggtggttagtacatcagccgttgatcaaatctcactccttgaaaattgacacacccacatagggaaacaaaac 85  Q
    |||||| |||||| |||| |||| |||||||||||||| |||||||||||||| |||| | |||||| |||||||||    
T  31409675 taggggaggttagcacatgagccattgatcaaatctcattccttgaaaattgatacacgcgcataggaaaacaaaac 31409599  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 61
Target Start/End: Complemental strand, 29729307 - 29729269
Alignment:
Q  23 acatcagccgttgatcaaatctcactccttgaaaattga 61  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  29729307 acatcaaccgttgatcaaatctcactccatgaaaattga 29729269  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 19962172 - 19962204
Alignment:
Q  18 ttagtacatcagccgttgatcaaatctcactcc 50  Q
    |||||| ||||||||||||||||||||||||||    
T  19962172 ttagtatatcagccgttgatcaaatctcactcc 19962204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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