View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5972-Insertion-2 (Length: 990)
Name: NF5972-Insertion-2
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972-Insertion-2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 790; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 9 - 934
Target Start/End: Complemental strand, 3426417 - 3425489
Alignment:
| Q |
9 |
aagagatatataaaatttgacagagttatcctagctaaagattgaactcataca--gtaatacattaatgattcgaatacataagaatcaacaagtattt |
106 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||| ||||| |
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| T |
3426417 |
aagagagatataaaatttgacagagttatcctagccaaagattgaattcatacatagtactacattaatgattcgaatacataagaatcgacaaatattt |
3426318 |
T |
|
| Q |
107 |
taggcaataatgaattatttaaagatataaatcaaaagaaggaaaattgaagtttaaaaaagctggctacagttagaaaataggtgaatccactttctca |
206 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3426317 |
taggcaataatgaattatttaaagatgtaaatcaaaagaaggaaaattgaaatttaaaaaagctggctacagttagaaaataggtgaatccactttctca |
3426218 |
T |
|
| Q |
207 |
cttattatgtcatgtcccctcaattaatcttcttcttcatggatgttggccattataaatacctacctccccatgtcttctttcccaagcttacaccctt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3426217 |
cttattatgtcatgtcccctcaattaatcttcttcttcatggatgttggccattataaatacctacctccccatgtcttctttcccaagcttacaccctt |
3426118 |
T |
|
| Q |
307 |
caccctctttcctttcccttctactacacctaaatctctctcttcctaactaaatcgnnnnnnncttcctaaaatcaatagtacnnnnnnnnnnnnngaa |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
3426117 |
caccctctttcctttcccttctactacacctaaatctctctcttcctaactaaatcgttttttccttcctaaaatcaatagtacaaaaacaaagaaagaa |
3426018 |
T |
|
| Q |
407 |
gacaaaatgaggagtatacccaccaaattgctaaacacacaccctaaaatcaccccaacaactattcctcactccttatggcacactccaatgccatatc |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3426017 |
gacaaaatgaggagtatacccaccaaattgctaaacacacaccctaacatcaccccaacaactattcctcactccttatggcacactccaatgccatatc |
3425918 |
T |
|
| Q |
507 |
tctttggaggactagctgctattataggtctcatagccttggcgttattggtactagcatgctcatattgtagactctcaagggacaaccaagatgagga |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3425917 |
tctttggaggactagctgctattataggtctcatagccttggcgttattggtactagcatgctcatattgtagactctcaagggacaaccaagatgagga |
3425818 |
T |
|
| Q |
607 |
tcatagtgctttggacaacaaagaaagtgaccctcaaactaagaaacctgtcaaggtttatgaagagaatatccttgtcattatggctggtaatgagaac |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3425817 |
tcatagtgctttggacaacaaagaaagtgaccctcaaactaagaaacctgtcaaggtttatgaagagaatatccttgtcattatggctggtaatgagaac |
3425718 |
T |
|
| Q |
707 |
ccaacattcttggctacccctgtagtttcgtccatcattaacaatgaaattgacaaccttgtacttgttccagctacttccacttcacaggaaaatgaag |
806 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
3425717 |
ccaacattcttggctacccctgtagttttgtccatcattaacaatgaaattgacaaccttgtacttgttccagctacttccacttcacaagaaaatgaag |
3425618 |
T |
|
| Q |
807 |
taggttcttgctcttcgcaacatagacaatgattgtgtttcattagctagtttgttggcaaagtcatgtggta-gtgttactagtatggtgttgaagcca |
905 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||| |||| |
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|
| T |
3425617 |
taggttcttgctcttcacaacatagacaatgattgtgtttcattacctagtttgttggtaaagtcatgtggtaggtgttactagtatggtgttgaggcca |
3425518 |
T |
|
| Q |
906 |
tagaaaatccaagtccattgacagatagt |
934 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3425517 |
tagaaaatccaagtccattgacagatagt |
3425489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 404 - 880
Target Start/End: Complemental strand, 3429499 - 3429026
Alignment:
| Q |
404 |
gaagacaaaatgaggagtatacccaccaaattgctaaacacacaccctaaaatcaccccaacaactattcctcactccttatggcacactccaatgccat |
503 |
Q |
| |
|
|||||||||||||||| ||||||||||| | |||||||||||||||| || | |||||| |||||||| ||| ||||||||||||||||||||| |||| |
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|
| T |
3429499 |
gaagacaaaatgaggactatacccaccacaatgctaaacacacaccccaacaacacccccgcaactattactccctccttatggcacactccaatcccat |
3429400 |
T |
|
| Q |
504 |
atctctttggaggactagctgctattataggtctcatagccttggcgttattggtactagcatgctcatattgtagactctcaagggacaaccaagatga |
603 |
Q |
| |
|
||||||||||||||||||| || ||||| || ||||||||||||||||| |||| |||||||||||| | ||||| |||||||||| |||||||||||| |
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|
| T |
3429399 |
atctctttggaggactagcagccattatgggactcatagccttggcgttgttggcactagcatgctctttttgtaaactctcaaggaacaaccaagatgg |
3429300 |
T |
|
| Q |
604 |
ggatcatagtgctttggacaacaaagaaagtgaccctcaaactaagaaacctgtcaaggtttatgaagagaatatccttgtcattatggctggtaatgag |
703 |
Q |
| |
|
||| || | || |||||||||||||| |||||||||||||||||| |||| ||||| || |||||||| ||||||| ||||||||||| |||||| |
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|
| T |
3429299 |
ggaccacaatgacttggacaacaaagagagtgaccctcaaactaaggaacccatcaagtcctacgaagagaaggtccttgtaattatggctgggaatgag |
3429200 |
T |
|
| Q |
704 |
aacccaacattcttggctacccctgtagtttcgtccatcattaacaatgaaattgacaaccttgtacttgttccagctacttccacttcacaggaaaatg |
803 |
Q |
| |
|
|| |||||||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||||||||||| |||||||||||||||| ||||||| |
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|
| T |
3429199 |
aaaccaacattcttggctacccctgtagttttttccatcattgacaaagatattgacaaccttgtacttgttccaactacttccacttcacaagaaaatg |
3429100 |
T |
|
| Q |
804 |
aagtaggttcttgctcttcgcaacatagacaatgattgtgtttcattagctagtttgttggcaaagtcatgtggtag |
880 |
Q |
| |
|
| ||||||||| ||||| |||||||| || ||||||||||||| ||||||||| ||| | ||| ||||||||||| |
|
|
| T |
3429099 |
a---aggttcttgttcttcacaacataggcagtgattgtgtttcactagctagttggttagtaaaatcatgtggtag |
3429026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 231 - 361
Target Start/End: Complemental strand, 3429663 - 3429541
Alignment:
| Q |
231 |
taatcttcttcttcatggatgttggccattataaatacctacctccccatgtcttctttcccaagcttacacccttcaccctctttcctttcccttctac |
330 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||| |||||||||||| |||| ||| ||||||||||||||||||||||||||| |
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|
| T |
3429663 |
taatcttcctctgcatggatgttggccattataaatacctacatccccatgtctt--------agctcacatacttcaccctctttcctttcccttctac |
3429572 |
T |
|
| Q |
331 |
tacacctaaatctctctcttcctaactaaat |
361 |
Q |
| |
|
||||||||||||| ||||||||||| |||| |
|
|
| T |
3429571 |
tacacctaaatcttcctcttcctaacaaaat |
3429541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 662 - 729
Target Start/End: Original strand, 48749309 - 48749376
Alignment:
| Q |
662 |
gtttatgaagagaatatccttgtcattatggctggtaatgagaacccaacattcttggctacccctgt |
729 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| || |||||||||| || || ||||| ||||| |
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|
| T |
48749309 |
gtttatgaagagaaagttcttgtcattatggctggtgatcagaacccaacgtttttagctacacctgt |
48749376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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