View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5972-Insertion-4 (Length: 850)
Name: NF5972-Insertion-4
Description: NF5972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5972-Insertion-4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 361 - 850
Target Start/End: Complemental strand, 36252758 - 36252269
Alignment:
| Q |
361 |
aattgcagttatgttatatcccagatgaataaaaaattcatttaaatctacaaaacttttaattaaaataatatttctttacctatataataaatctcaa |
460 |
Q |
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| T |
36252758 |
aattgcagttatgttatatcccagatgaataaaaaattcatttaaatctacaaaacttttaattaaaataatatttctttacctatataataaatctcaa |
36252659 |
T |
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| Q |
461 |
aaagaggtatttgtttcataaaaaatgtgtaatttaagaaaaataaaggctaaattgacattaaagtagtttatgagtttgaagtaaaaagatcatacag |
560 |
Q |
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| T |
36252658 |
aaagaggtatttgtttcataaaaaatgtgtaatttaagaaaaataaaggctaaattgacattaaagtagtttatgagtttgaagtaaaaagatcatacag |
36252559 |
T |
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| Q |
561 |
atttataaagtttatggcggacaataaatcaaggaattcaatgggtatattctttttaaaaataatccatatgcatactacgttgatagcatgcaataat |
660 |
Q |
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| T |
36252558 |
atttataaagtttatggcggacaataaatcaaggaattcaatgggtatattctttttaaaaataatccatatgcatactacgttgatagcatgcaataat |
36252459 |
T |
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| Q |
661 |
gaaactaacttgtttccagcaatccatatatgcttatattnnnnnnnnnnnnnnntcatatgcaggaagatacaatccaatgatctttattgtcctgctt |
760 |
Q |
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| T |
36252458 |
gaatctaacttgtttccagcaatccatatatgcttatatt--aaaaaaaaaaaaatcatatgcaggaagatacaatccaatgatctttattgtcctgctt |
36252361 |
T |
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| Q |
761 |
attcaacaagcaaaatattttcaactttaatacaaacgta-gttagccgaattgcacctccttggaagctctt-cccattgagtgtttctaa |
850 |
Q |
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| T |
36252360 |
attcaacaagcaaaatattttcaactttaatacaaacgtaggttagccgaattgcacctccttggaagctcttccccattgagtgtttctaa |
36252269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 36253113 - 36252890
Alignment:
| Q |
9 |
accttttgagctgtaaattgggatgtgtttgtnnnnnnnnngataagcaannnnnnnaga-ttattcgcaaggtgctcatgcttatgcagggtcacatct |
107 |
Q |
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| T |
36253113 |
accttttgagctgtaaattgggatgtgtttgt--aaacaaagataagcaaattttttagatttattcgcaaggtgctcatgcttatgcagggccacatct |
36253016 |
T |
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| Q |
108 |
tttttagtacaaaattaaattttatattgttaatggataaaatagatagccctacaatattttaaaatatgcatatttgattaaaatagttgcattattg |
207 |
Q |
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| T |
36253015 |
tttttagtacaaaattaaattttatattgttaatggataaaatagatagccctacaatattttaaaatatgcatatttgattaaaatagttgcattattg |
36252916 |
T |
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| Q |
208 |
ttatc----tcactcaccgaaatatg |
229 |
Q |
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| T |
36252915 |
ttatctcgatcactcaccgaaatatg |
36252890 |
T |
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Back To:
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